Update README

README.md

@@ -4,13 +4,13 @@
 This is a public repository containing scripts described in the publication:
 
 Lysenkova Wiklander et al.
-"A complete digital karyotype of the B-cell leukemia REH cell line resolved by long-read sequencing"
+"A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing"
 
 ## Data
-Sequencing data and BAM files for this project are available at NCBI/SRA under the BioProject accession numbers PRJNA600820 and PRJNA834955. These data have been analyzed on a high performance cluster (HPC) using the commands in `01_hpc_processing`. The resulting analysis datasets are available at https://doi.org/10.5281/zenodo.7702098.
+Sequencing data and BAM files for this project are available at NCBI/SRA under the BioProject accession numbers PRJNA600820 and PRJNA834955. These data have been analyzed on a high performance cluster (HPC) using the commands in `01_hpc_processing`. The resulting analysis datasets are available at https://doi.org/10.5281/zenodo.108757278.
 
 ## Instructions
-The scripts are numbered in the order they should be executed. 
+The scripts are numbered in the order they should be executed.
 
 ### HPC Bash Scripts
 For HPC scripts, the full paths to source files have been omitted for simplicity. You will need to adjust them to your environment.
@@ -21,7 +21,7 @@ To run the other scripts in this repository, you will need to do the following.
 Install:
 - R 4.2.1 and an integrated environment, e.g. RStudio
 - R packages: chromoMap, RColorBrewer, VennDiagram
-- Python 3.8 
+- Python 3.8
 - Necessary Python packages: `pip install -r requirements.txt`
 - SURVIVOR v1.0.7 built from: https://github.com/fritzsedlazeck/SURVIVOR and placed in the directory `02_sv_callset_analysis/bin`
 
@@ -38,9 +38,9 @@ data/sv_callsets:
 - pb.sniffles.vcf
 
 data/fusion_callsets/long_read:
-- cupcake.long.csv  
-- cupcake.std.csv  
-- jaffa_results.csv  
+- cupcake.long.csv
+- cupcake.std.csv
+- jaffa_results.csv
 
 data/fusion_callsets/short_read:
 - GM12878.fusionreport.txt
@@ -50,4 +50,4 @@ data/fusion_callsets/short_read:
 - REH.fusioncatcher.fusion-genes.txt
 - REH.pizzly.txt
 - REH.squid.fusions.annotated.txt
-- REH.starfusion.abridged.tsv
+- REH.starfusion.abridged.tsv