Skip to content

Commit

Permalink
bug in demo_images url (#1021)
Browse files Browse the repository at this point in the history
  • Loading branch information
carsen-stringer committed Oct 25, 2024
1 parent 9d2ee82 commit 3841575
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -185,7 +185,7 @@ python -m cellpose
The first time cellpose runs it downloads the latest available trained model weights from the website.
You can now **drag and drop** any images (*.tif, *.png, *.jpg, *.gif) into the GUI and run Cellpose, and/or manually segment them. When the GUI is processing, you will see the progress bar fill up and during this time you cannot click on anything in the GUI. For more information about what the GUI is doing you can look at the terminal/prompt you opened the GUI with. For example data, see [website](http://www.cellpose.org) or this [zip file](https://www.cellpose.org/static/images/demo_images.zip). For best accuracy and runtime performance, resize images so cells are less than 100 pixels across.
You can now **drag and drop** any images (*.tif, *.png, *.jpg, *.gif) into the GUI and run Cellpose, and/or manually segment them. When the GUI is processing, you will see the progress bar fill up and during this time you cannot click on anything in the GUI. For more information about what the GUI is doing you can look at the terminal/prompt you opened the GUI with. For example data, see [website](https://www.cellpose.org) or this [zip file](https://www.cellpose.org/static/images/demo_images.zip). For best accuracy and runtime performance, resize images so cells are less than 100 pixels across.
For 3D data, with multi-Z, please use the 3D version of the GUI with:
~~~~
Expand All @@ -195,7 +195,7 @@ python -m cellpose --Zstack
## Step-by-step demo
1. Download this [folder](http://cellpose.org/static/images/demo_images.zip) of images and unzip it. These are a subset of the test images from the paper.
1. Download this [zip file](https://www.cellpose.org/static/images/demo_images.zip) of images and unzip it. These are a subset of the test images from the paper.
2. Start the GUI with `python -m cellpose`.
3. Drag an image from the folder into the GUI.
4. Set the model (in demo all are `cyto`) and the channel you want to segment (in demo all are `green`). Optionally set the second channel if you are segmenting `cyto` and have an available nucleus channel.
Expand Down

0 comments on commit 3841575

Please sign in to comment.