A DSL for data-driven computational pipelines

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

A genome browser in your Jupyter notebook

Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

Easily restore objects from AWS glacier from the command line using python

Amazon Web Services Operator Interface

A COVID-19 CoV Genetics (CG) browser to inform therapeutics development

add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

regentrans: R package for investigating regional pathogen transmission using genomic data

Bioinformatics program inStrain

Conda recipes for the bioconda channel.

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

Analysis of the population diversity of SARS-CoV-2 within and between individual patients

some useful scripts for working with genomics and sequencing data

Code for analyzing population genomics in genome-resolved metagenomes

Read alignment statistics for metagenomics

Identifies and clusters marker genes to delineate species groups in metagenomes

Quickly calculate coverage of sequences in a .sam file while retaining breadth information

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets

Fast Whole-Genome Similarity (ANI) Estimation

Wilbanks - Devoto crispr project summer 2017

Identifying ViRal and Circular content in metAgenomes

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Jupyter Interactive Notebook

Helper tool to manage directories and directory templates.

Python tools for ecological data analyses