Python & R versions specified in setupAnacondaVENV.sh are not available

[nekonekko]

Hello.
Thank you for creating a great tool!

I think Python & R versions specified in setupAnacondaVENV.sh are no longer available.
The oldest Python version is 3.8.5 and R is 3.5.1.

Could you update these versions?

[yutuyt01]

Hello!
Thanks for using BEELINE! Could you post the error you were getting with the script? I was able to setup a conda environment with python 3.7.1 and R 3.5.0 using the script.

[nekonekko]

Thank you for your quick reply. Is it due to the conda version or OS?
My environment and error are as follows.

Envirionment:

Chip: Apple M3 Max
OS: macOS Sonoma version 14.6.1

Error:

> conda --version
conda 24.5.0
> conda create -y --name BEELINE python=3.7.1 r=3.5.0 --file requirements.txt

Collecting package metadata (current_repodata.json): done
Solving environment: unsuccessful attempt using repodata from current_repodata.json, retrying with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed

PackagesNotFoundError: The following packages are not available from current channels:

  - r=3.5.0
  - pandas==0.23.4
  - scikit-learn==0.21.2
  - matplotlib==3.0.2
  - python=3.7.1
  - numpy==1.15.4
  - rpy2==2.9.1
  - pyyaml==5.4

Current channels:

  - https://conda.anaconda.org/conda-forge/osx-arm64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/osx-arm64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/osx-arm64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

[yutuyt01]

Hello,
Apologies for the late reply! We're still looking into this and seeing if we can bump dependencies up across the board so that requirements are available for M3 chips.