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34 Open 59 Closed
34 Open 59 Closed
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Issues list

how to get refNetwork.csv of scRNA-seq data with type
#129 opened Dec 1, 2024 by xuerouli
Python & R versions specified in setupAnacondaVENV.sh are not available
#128 opened Sep 5, 2024 by nekonekko
3
Faster way of performing AUC Evaluations on larger datasets.
#126 opened Aug 25, 2024 by FaizalJnu
Automatic generation of reference networks
#125 opened Aug 10, 2024 by yiqisu
Reference networks
#124 opened Aug 10, 2024 by yiqisu
Data download
#121 opened Aug 9, 2024 by yiqisu
Preprocessing for scRNA-seq and scATAC-seq data
#120 opened Aug 9, 2024 by yiqisu
Check the consistency of TFEdges and selfEdges
#119 opened Aug 9, 2024 by yiqisu
Add the NG-SEM algorithm enhancement New feature or request
#116 opened Jul 17, 2024 by yutuyt01
1
Add TENET algorithm enhancement New feature or request
#113 opened Jul 5, 2024 by yutuyt01
1
No general command to run SINGE across different OS
#111 opened Jun 17, 2024 by kevchen03
1
Algorithm SINGE fails to run on Windows - Unterminated quoted string
#109 opened Jun 3, 2024 by yutuyt01
1
1
BEELINE Installation Failure on Windows
#104 opened May 24, 2024 by kevchen03
1
2
PIDC method error and not generating any outputs [ERROR: LoadError: MethodError: no method matching setindex_shape_check(::Int64, ::Int64)]
#93 opened Apr 14, 2023 by elhaam
@ktakers @yiqisu
4
Not able to run GENIE3 and GRNBOOST2
#92 opened Apr 6, 2023 by Aishwarya-Girish
@ktakers @yiqisu
8
Reduce Disk Space for ExpressionData.csv Copies
#91 opened Mar 30, 2023 by ktakers
Question about BEELINE PseudoTime.csv file format in BEELINE-data?
#90 opened Feb 9, 2023 by gangcai
2
Add support for running BEELINE on multiple datasets specified implicitly
#85 opened Nov 21, 2022 by tmmurali
@yiqisu
Update documentation for BLEvaluator.py
#84 opened Nov 17, 2022 by packers12345
@ktakers @yiqisu
Implement GRN visualization for evaluated algorithms
#77 opened Jun 23, 2022 by ktakers
1
Upload experimental scRNA-Seq configuration files to Zenodo
#76 opened Jun 23, 2022 by ktakers
Allow metrics to be selected for curated overview plots in BLPlotter
#74 opened Jun 22, 2022 by ktakers
BLPlotter center curated overview plot headers
#71 opened Jun 22, 2022 by ktakers
1
Some problem of reproducing Fig.5 results
#67 opened May 11, 2022 by JaneJiayiDong
1
Fail to reproduce Fig.5 results for human data
#65 opened Apr 11, 2022 by jonathan-f
@ktakers @adyprat
4
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