Merge pull request #3 from Mye-InfoBank/sera/issue_random_sample_size

Sera/issue random sample size
Mye-InfoBank · Jun 2, 2024 · 9ac5941 · 9ac5941
2 parents 668716e + 3df6e48
commit 9ac5941
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/docker-compose.yml b/docker-compose.yml
@@ -5,4 +5,4 @@ services:
       dockerfile: Dockerfile
     ports:
       - 8080:8080
-    image: bigdatainbiomedicine/simba-qc:0.2.0
+    image: bigdatainbiomedicine/simba-qc:0.2.1
diff --git a/src/sliders.py b/src/sliders.py
@@ -76,12 +76,12 @@ def return_of_adata_meta():
     @reactive.effect
     def random_sample():
         adata = _adata_qc.get()
-        sample_size = input['random_sample_size'].get()
-
         if adata is None:
             return
-
-        adata_sample = adata[np.random.choice(adata.obs.index, sample_size, replace=False)]
+
+        sample_size = input['random_sample_size'].get()
+
+        adata_sample = adata[np.random.choice(adata.obs.index, min(sample_size, len(adata.obs)), replace=False)]
         _adata_sample.set(adata_sample)
 
     @output