Implement CI/CD workflow #18
Workflow file for this run
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| name: SIMBA CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| release: | |
| types: [published] | |
| env: | |
| NXF_ANSI_LOG: false | |
| NXF_APPTAINER_CACHEDIR: /tmp/apptainer-cache | |
| concurrency: | |
| group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}" | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: Run pipeline with test data | |
| # Only run on push if this is the nf-core dev branch (merged PRs) | |
| if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/circrna') }}" | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| NXF_VER: | |
| - "23.04.0" | |
| - "latest-everything" | |
| PROFILE: | |
| - "build" | |
| - "extend" | |
| - "sub" | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4 | |
| - name: Install Nextflow | |
| uses: nf-core/setup-nextflow@v1 | |
| with: | |
| version: "${{ matrix.NXF_VER }}" | |
| - name: Install Apptainer | |
| uses: eWaterCycle/setup-apptainer@v2 | |
| - name: Apptainer cache | |
| id: apptainer-cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.NXF_APPTAINER_CACHEDIR }} | |
| key: ${{ runner.os }}-apptainer-${{ hashFiles('docker/**') }} | |
| - name: Run pipeline | |
| run: | | |
| cd example/${{ matrix.PROFILE }} && ./run.sh |