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Drosophila melanogaster is an interesting subject for test data since
the genome is small (±180Mb)
there are only 4 chromosomes (can expect 6 chromosome arms after scaffolding because the centromeres are hard to go through even with Hi-C)
plenty of sequencing data is available
There is good PacBio HiFi data from the F1 of a cross between two highly inbred strains (A4 and ISO1).
This should be a good heterozygous genome that assembles very well with hifiasm. I am currently testing the assembly to make sure. Will post results to this thread.
There is Hi-C data for other strains, need to test if it works well.
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The text was updated successfully, but these errors were encountered: