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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 234 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 8

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 217 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 202 46

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 298 repositories
  • EGA-SE-user-docs Public

    Repository with all the information and documents for the the users of ega-se

    NBISweden/EGA-SE-user-docs’s past year of commit activity
    1 0 0 0 Updated Nov 28, 2024
  • sda-uppmax-integration Public
    NBISweden/sda-uppmax-integration’s past year of commit activity
    Go 0 0 1 0 Updated Nov 28, 2024
  • teaching_literature_club Public

    NBIS' teaching literature club

    NBISweden/teaching_literature_club’s past year of commit activity
    Shell 0 GPL-3.0 1 0 0 Updated Nov 28, 2024
  • workshop-reproducible-research Public

    NBIS/Elixir course: Tools for Reproducible Research

    NBISweden/workshop-reproducible-research’s past year of commit activity
    HTML 60 CC-BY-4.0 32 3 0 Updated Nov 28, 2024
  • workshop-ngsintro Public

    Workshop • Intro to Bioinformatics using NGS data • 5 days

    NBISweden/workshop-ngsintro’s past year of commit activity
    HTML 14 GPL-3.0 6 0 0 Updated Nov 28, 2024
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation’s past year of commit activity
    Python 3 0 0 1 Updated Nov 28, 2024
  • AGAT Public

    Another Gtf/Gff Analysis Toolkit

    NBISweden/AGAT’s past year of commit activity
    Perl 467 GPL-3.0 56 20 (3 issues need help) 1 Updated Nov 27, 2024
  • Earth-Biogenome-Project-pilot Public

    Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

    NBISweden/Earth-Biogenome-Project-pilot’s past year of commit activity
    Nextflow 12 GPL-3.0 8 48 (1 issue needs help) 2 Updated Nov 27, 2024
  • GenErode Public

    GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

    NBISweden/GenErode’s past year of commit activity
    Python 25 GPL-3.0 7 14 0 Updated Nov 27, 2024
  • workshop-pgip-H24 Public

    Population genomics in practice H24

    NBISweden/workshop-pgip-H24’s past year of commit activity
    TeX 0 0 0 0 Updated Nov 27, 2024
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