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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
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About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 242 84

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 16

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 222 106

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 211 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 321 repositories
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 59 4 Updated Apr 16, 2025
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 45 0 Updated Apr 16, 2025
  • swefreq Public

    Swedish Frequency resource for genomics website

    NBISweden/swefreq’s past year of commit activity
    Python 7 GPL-3.0 1 0 10 Updated Apr 15, 2025
  • workshop-data-visualization-r Public

    Materials for NBIS workshop on data visulalization

    NBISweden/workshop-data-visualization-r’s past year of commit activity
    HTML 2 GPL-3.0 3 1 1 Updated Apr 15, 2025
  • AGAT Public

    Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

    NBISweden/AGAT’s past year of commit activity
    Perl 496 GPL-3.0 58 17 (1 issue needs help) 0 Updated Apr 15, 2025
  • PLP_Design_Portal Public

    This repository contains a package to create padlock probes that target RNA directly and for developing a user-friendly.portal

    NBISweden/PLP_Design_Portal’s past year of commit activity
    0 0 11 0 Updated Apr 15, 2025
  • scQC Public

    Single cell QC analysis pipeline

    NBISweden/scQC’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Apr 15, 2025
  • Training-Tech-shorts Public

    Short lessons, training various technologies useful to our work.

    NBISweden/Training-Tech-shorts’s past year of commit activity
    HTML 5 12 17 1 Updated Apr 15, 2025
  • MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    NBISweden/MrBayes’s past year of commit activity
    C 242 GPL-3.0 84 73 0 Updated Apr 15, 2025
  • sda-services-backup Public
    NBISweden/sda-services-backup’s past year of commit activity
    Go 2 1 2 0 Updated Apr 15, 2025
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