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15 Open 336 Closed
15 Open 336 Closed
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Issues list

agat_convert_mfannot2gff.pl does not include LAGLIDADG, GIY and orfs in the gff file
#533 opened Apr 2, 2025 by GabrieleRigano99
Add support for [X] cigar string on agat_convert_minimap2_bam2gff.pl
#520 opened Jan 24, 2025 by eggrandio
2
agat_sp_flag_premature_stop_codons.pl mostly flags genes without premature stop codons
#504 opened Oct 17, 2024 by JWDebler
4
agat_convert_minimap2_bam2gff.pl handle Insertion and deletion
#503 opened Oct 8, 2024 by tjwu
Some transcripts are missing agat_convert_sp_gxf2gxf.pl
#478 opened Aug 22, 2024 by IrinaVKuznetsova
1
How to merge two genes with overlapping positions but no overlapping CDS?
#468 opened Jun 20, 2024 by binzhengbin
10
agat_sp_extract_sequences.pl: support for multicistronic transcripts.
#451 opened Apr 8, 2024 by jdcla
agat_sp_extract_sequences.pl does not incorporate CDS feature ID in headers enhancement New feature or request
#450 opened Apr 8, 2024 by jdcla
5
Parsing of the X CIGAR code in bam files
#422 opened Feb 7, 2024 by sanyalab
3
Tiny bug - gtf output header
#386 opened Aug 1, 2023 by SheepwormJM
2
add a check in OmniscientI check_identical_loci
#334 opened Feb 17, 2023 by Juke34
URL Escape Characters Converted
#250 opened May 6, 2022 by skchronicles
3
Creating a Hints file for use in Augustus from a gff file help wanted Extra attention is needed
#177 opened Sep 19, 2021 by sanyalab
6
Venn diagramm enhancement New feature or request
#81 opened Oct 19, 2020 by mictadlo
agat_sp_statistics.pl add an option to collapse overlapping part enhancement New feature or request
#26 opened Mar 3, 2020 by Juke34
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