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Adding a few rof notebooks #126

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Adding a few rof notebooks #126

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Commits on Aug 22, 2024

  1. added rof notebook config example

    @nmizukami
    nmizukami committed Aug 22, 2024
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  2. added rof notebooks with ancillary data and scripts

    @nmizukami
    nmizukami committed Aug 22, 2024
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Commits on Aug 23, 2024

  1. reformatting with pre-commit

    @nmizukami
    nmizukami committed Aug 23, 2024
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  2. change one of key names in setup and notebook changes associated with… 

    … this, and change from pre-commit reformatting
    @nmizukami
    nmizukami committed Aug 23, 2024
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  3. Update config.yml to include rof in timeseries and book_toc

    @TeaganKing
    TeaganKing authored Aug 23, 2024
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  4. Update run.py to include rof

    @TeaganKing
    TeaganKing authored Aug 23, 2024
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  5. updates for pre-commit

    @TeaganKing
    TeaganKing committed Aug 23, 2024
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  6. replace math sqrt with numpy sqrt

    @nmizukami
    nmizukami committed Aug 23, 2024
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  7. forgot uncommenting other component configs

    @nmizukami
    nmizukami committed Aug 23, 2024
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Commits on Sep 12, 2024

  1. adding new script to compute various flow metrics

    @nmizukami
    nmizukami committed Sep 12, 2024
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Commits on Sep 14, 2024

  1. remove unused packages, rename setup variables

    @nmizukami
    nmizukami committed Sep 14, 2024
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  2. added one new rof notebook

    @nmizukami
    nmizukami committed Sep 14, 2024
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Commits on Sep 19, 2024

  1. update readme and config for clarification purposes

    @TeaganKing
    TeaganKing committed Sep 19, 2024
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  2. fix a few other failed checks from pre-commit

    @TeaganKing
    TeaganKing committed Sep 19, 2024
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  3. added myCount function in metrics.py. it was missing

    @nmizukami
    nmizukami committed Sep 19, 2024
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  4. fixed all checks

    @TeaganKing
    TeaganKing committed Sep 19, 2024
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  5. removed commented out scripts

    @nmizukami
    nmizukami committed Sep 19, 2024
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  6. added comments for each def with docstrings

    @nmizukami
    nmizukami committed Sep 19, 2024
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Commits on Sep 20, 2024

  1. fix river_runoff underscore

    @TeaganKing
    TeaganKing committed Sep 20, 2024
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  2. code style

    @TeaganKing
    TeaganKing committed Sep 20, 2024
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  3. initial logging for print statements that we added

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  4. pre commits

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  5. formatting

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  6. remove filename

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  7. include log level in config file and move to utils

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  8. pass logger argument in timeseries and update warnings.warn to logger… 

    ….warning
    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  9. precommit updates

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  10. change default logging level to info since that's probably better whi… 

    …le in development
    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  11. initial implementation of config file documentation

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  12. adjust spacing

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  13. loop through files including config.md in conf.py

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  14. Some clean-up for key_metrics 

    1. Standardize the way dates are passed (glacier notebook pulls year out of
full date string to match atmosphere)
2. Add option for baseline comparison to atmosphere NMSE
3. Update config.yml to use run 104 (keeping 092 as baseline)
4. Clean up time series generation (allow empty list to specify "don't convert
any files to time series for this component")
    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  15. Clean up glacier notebook 

    1. Only set base_last_year if a baseline case has been provided
2. Update time series plots to account for differences between climo_nyears and
base_climo_nyears
    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  16. Case 104 has 21 more years of data 

    Also fixed a bug in the NMSE plotting
    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  17. Use hide-input and hide-cell tags 

    For key_metrics examples, the hide-input tucks the python code away behind a
drop-down menu. There is one cell in the glacier notebook that uses hide-cell
instead of hide-input because the output isn't important (printing a message
about the number of years used to compute climatology)
    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  18. key_metrics generates time-series for both cases 

    Updated the timeseries block of config.yml to include both case_name and
base_case_name; this uncovered a few issues in constructing the arguments for
the call to create_time_series()
    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  19. Update time axis for glacier plot

    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  20. Create contributors.md

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  21. Add github handles to contributors.md

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  22. Add hyperlinks to contributors.md

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  23. add one more github handle...

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  24. updates to include on github.io page and Lev's affiliation

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  25. Update Anna's affiliation

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  26. Include clearer instructions on adding a name to contributors.md

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  27. remove config from loop in conf.py since config.md is in docs dir

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  28. images now rendering correctly

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  29. update to use key metrics images

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  30. include docs in gitignore

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  31. fix for configuration file documentation images

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  32. move images to docs/_static/images/config

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  33. updates from review

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  34. include else statement in case of log level with typo

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  35. add quotes around log level in config!

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  36. add quotes in coupled_model config

    @TeaganKing @nmizukami
    TeaganKing authored and nmizukami committed Sep 20, 2024
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  37. Remove manage externals 

    CESM 3 has switched to git-fleximod, and CUPiD will be using git submodules to
ensure compatibility
    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  38. Add ADF and mom6-tools as submodules

    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  39. Update documentation to remove manage_externals 

    The README no longer references manage_externals
    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  40. Don't name specific directories in externals/ 

    Per comment on PR, just talking about the subdirectories of externals/ is more
future-proof than calling out ADF and mom6-tools
    @mnlevy1981 @nmizukami
    mnlevy1981 authored and nmizukami committed Sep 20, 2024
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  41. add var element in rof timeseries

    @nmizukami
    nmizukami committed Sep 20, 2024
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  42. Merge branch 'NCAR:main' into main_adding_rof

    @nmizukami
    nmizukami authored Sep 20, 2024
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Commits on Oct 1, 2024

  1. added ocean_discharge notebook in chapter. added a comment on case in… 

    …put.
    @nmizukami
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  2. Merge remote-tracking branch 'nmizukami/main_adding_rof' into main_ad… 

    …ding_rof
    @nmizukami
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  3. remove case_dir input b/c it is not used

    @nmizukami
    nmizukami committed Oct 1, 2024
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  4. Cleanup based on review comments e.g., remove empty cells, etcs

    @nmizukami
    nmizukami committed Oct 1, 2024
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Commits on Oct 11, 2024

  1. change dask setupt

    @nmizukami
    nmizukami committed Oct 11, 2024
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  2. rof updates

    @nmizukami
    nmizukami committed Oct 11, 2024
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  3. rof sepcific setup update

    @nmizukami
    nmizukami committed Oct 11, 2024
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  4. automated reformat

    @nmizukami
    nmizukami committed Oct 11, 2024
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  5. just temporal comment out

    @nmizukami
    nmizukami committed Oct 11, 2024
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  6. auto-formatting

    @nmizukami
    nmizukami committed Oct 11, 2024
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Commits on Oct 13, 2024

  1. uncomment ocean_discharge notebook config

    @nmizukami
    nmizukami committed Oct 13, 2024
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  2. key values updates and remove some items

    @nmizukami
    nmizukami committed Oct 13, 2024
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  3. automated format fix on ocean-discharge notebook

    @nmizukami
    nmizukami committed Oct 13, 2024
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Commits on Oct 18, 2024

  1. rof specific setup changes

    @nmizukami
    nmizukami committed Oct 18, 2024
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  2. a few rof parameters added in config.yml

    @nmizukami
    nmizukami committed Oct 18, 2024
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  3. auto reformatting

    @nmizukami
    nmizukami committed Oct 18, 2024
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Commits on Oct 19, 2024

  1. auto formatting

    @nmizukami
    nmizukami committed Oct 19, 2024
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