Remove all redundant music_box_ from file names and updated referen…

…ces [Issue #177] (#180)

* Remove all redundant `music_box_` from file names and updated references [Issue #177]

* correcting relative imports

* correcting more imports

* renaming executable

---------

Co-authored-by: Kyle Shores <[email protected]>

pyproject.toml

@@ -28,4 +28,4 @@ dependencies = [
 Home = "https://github.com/NCAR/music-box"
 
 [project.scripts]
-music_box = "acom_music_box.music_box_main:main"
+music_box = "acom_music_box.main:main"

src/acom_music_box/__init__.py

@@ -7,15 +7,15 @@
 __version__ = "2.1.5"
 
 from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
-from .music_box_species import Species
-from .music_box_product import Product
-from .music_box_reactant import Reactant
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_species_list import SpeciesList
-from .music_box_model_options import BoxModelOptions
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_reaction_rate import ReactionRate
-from .music_box_conditions import Conditions
+from .species import Species
+from .product import Product
+from .reactant import Reactant
+from .reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from .species_list import SpeciesList
+from .model_options import BoxModelOptions
+from .species_concentration import SpeciesConcentration
+from .reaction_rate import ReactionRate
+from .conditions import Conditions
 
-from .music_box_evolving_conditions import EvolvingConditions
+from .evolving_conditions import EvolvingConditions
 from .music_box import MusicBox

src/acom_music_box/music_box_conditions.py → src/acom_music_box/conditions.py

@@ -1,10 +1,15 @@
 from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_species import Species
-from .music_box_reaction_rate import ReactionRate
+from .species_concentration import SpeciesConcentration
+from .species import Species
+from .reaction_rate import ReactionRate
 from typing import List
 import csv
 import os
+from typing import List
+from .reaction_rate import ReactionRate
+from .species import Species
+from .species_concentration import SpeciesConcentration
+from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
 
 import logging
 logger = logging.getLogger(__name__)

src/acom_music_box/music_box_evolving_conditions.py → src/acom_music_box/evolving_conditions.py

@@ -1,9 +1,9 @@
 import csv
 import os
 from typing import List
-from .music_box_conditions import Conditions
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_reaction_rate import ReactionRate
+from .conditions import Conditions
+from .species_concentration import SpeciesConcentration
+from .reaction_rate import ReactionRate
 
 
 class EvolvingConditions:

src/acom_music_box/music_box.py

@@ -1,17 +1,28 @@
 import musica
 import csv
-from .music_box_conditions import Conditions
-from .music_box_model_options import BoxModelOptions
-from .music_box_species_list import SpeciesList
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_reaction_list import ReactionList
-from .music_box_evolving_conditions import EvolvingConditions
+from .conditions import Conditions
+from .model_options import BoxModelOptions
+from .species_list import SpeciesList
+from .reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from .reaction_list import ReactionList
+from .evolving_conditions import EvolvingConditions
 import json
 import os
 
 import logging
 logger = logging.getLogger(__name__)
 
+from .evolving_conditions import EvolvingConditions
+from .reaction_list import ReactionList
+from .reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from .species_list import SpeciesList
+from .model_options import BoxModelOptions
+from .conditions import Conditions
+
+import csv
+import musica
+
+
 
 class MusicBox:
     """

src/acom_music_box/music_box_reaction_list.py → src/acom_music_box/reaction_list.py

@@ -1,9 +1,9 @@
 import os
 import json
 from typing import List
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_reactant import Reactant
-from .music_box_product import Product
+from .reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from .reactant import Reactant
+from .product import Product
 
 import logging
 logger = logging.getLogger(__name__)

src/acom_music_box/music_box_species_list.py → src/acom_music_box/species_list.py

@@ -1,7 +1,7 @@
 import json
 import os
 from typing import List
-from .music_box_species import Species
+from .species import Species
 
 
 class SpeciesList: