Auto-format code using Clang-Format (#276)

Co-authored-by: GitHub Actions <[email protected]>

src/acom_music_box/data_output.py

@@ -4,6 +4,7 @@
 
 logger = logging.getLogger(__name__)
 
+
 class DataOutput:
     """
     A class to handle data output operations for a DataFrame, including converting to CSV
@@ -41,7 +42,7 @@ class DataOutput:
     ... })
     >>> args = Namespace(output='output.nc', output_format='netcdf')
     >>> data_output = DataOutput(df, args)
-    >>> data_output.output()    
+    >>> data_output.output()
     """
 
     def __init__(self, df, args):
@@ -75,7 +76,7 @@ def __init__(self, df, args):
     def _get_default_filename(self):
         """Generate a default filename based on the current datetime and output format."""
         now = datetime.datetime.now().strftime("%Y%m%d_%H%M%S")
-        extension = 'csv' if self.args.output_format == 'csv' else 'nc' 
+        extension = 'csv' if self.args.output_format == 'csv' else 'nc'
         return f"music_box_{now}.{extension}"
 
     def _ensure_output_path(self):
@@ -153,4 +154,3 @@ def output(self):
             error = f"Unsupported output format: {self.args.output_format}"
             logger.error(error)
             raise ValueError(error)
-

src/acom_music_box/main.py

@@ -160,6 +160,7 @@ def on_add(sel):
 
     plt.show()
 
+
 def main():
     start = datetime.datetime.now()
 

src/acom_music_box/music_box.py

@@ -68,7 +68,7 @@ def solve(self, callback=None):
         the specified file.
 
         Args:
-            callback (function, optional): A callback function that is called after each time step. Defaults to None. 
+            callback (function, optional): A callback function that is called after each time step. Defaults to None.
             The callback will take the most recent results, the current time, conditions, and the total simulation time as arguments.
 
         Returns:

tests/integration/test_executable_data_output.py

@@ -4,46 +4,56 @@
 import pytest
 import tempfile
 
+
 @pytest.fixture
 def temp_dir():
     with tempfile.TemporaryDirectory() as tmpdirname:
         yield tmpdirname
 
+
 def test_print_results_to_terminal(temp_dir):
     result = subprocess.run(['music_box', '-e', 'Analytical'], capture_output=True, text=True, cwd=temp_dir)
     assert len(result.stdout) > 0
 
+
 def test_create_netcdf_with_timestamp(temp_dir):
     subprocess.run(['music_box', '-e', 'Analytical', '--output-format', 'netcdf'], cwd=temp_dir)
     assert glob.glob(os.path.join(temp_dir, "music_box_*.nc"))
 
+
 def test_create_csv_with_timestamp(temp_dir):
     subprocess.run(['music_box', '-e', 'Analytical', '--output-format', 'csv'], cwd=temp_dir)
     assert glob.glob(os.path.join(temp_dir, "music_box_*.csv"))
 
+
 def test_create_named_csv(temp_dir):
     subprocess.run(['music_box', '-e', 'Analytical', '--output-format', 'csv', '-o', 'out.csv'], cwd=temp_dir)
     assert os.path.exists(os.path.join(temp_dir, "out.csv"))
 
+
 def test_create_named_netcdf(temp_dir):
     subprocess.run(['music_box', '-e', 'Analytical', '--output-format', 'netcdf', '-o', 'out.nc'], cwd=temp_dir)
     assert os.path.exists(os.path.join(temp_dir, "out.nc"))
 
+
 def test_create_directory_and_named_netcdf(temp_dir):
     os.makedirs(os.path.join(temp_dir, "results"), exist_ok=True)
     subprocess.run(['music_box', '-e', 'Analytical', '--output-format', 'netcdf', '-o', 'results/out.nc'], cwd=temp_dir)
     assert os.path.exists(os.path.join(temp_dir, "results/out.nc"))
 
+
 def test_create_directory_and_named_csv(temp_dir):
     os.makedirs(os.path.join(temp_dir, "results"), exist_ok=True)
     subprocess.run(['music_box', '-e', 'Analytical', '--output-format', 'csv', '-o', 'results/out.csv'], cwd=temp_dir)
     assert os.path.exists(os.path.join(temp_dir, "results/out.csv"))
 
+
 def test_create_directory_and_timestamped_csv(temp_dir):
     os.makedirs(os.path.join(temp_dir, "results"), exist_ok=True)
     subprocess.run(['music_box', '-e', 'Analytical', '--output-format', 'csv', '-o', 'results/'], cwd=temp_dir)
     assert glob.glob(os.path.join(temp_dir, "results/music_box_*.csv"))
 
+
 def test_create_directory_and_timestamped_netcdf(temp_dir):
     os.makedirs(os.path.join(temp_dir, "results"), exist_ok=True)
     subprocess.run(['music_box', '-e', 'Analytical', '--output-format', 'netcdf', '-o', 'results/'], cwd=temp_dir)

tests/unit/test_data_output.py

@@ -6,6 +6,7 @@
 from argparse import Namespace
 from acom_music_box import DataOutput
 
+
 class TestDataOutput(unittest.TestCase):
 
     def setUp(self):
@@ -19,7 +20,7 @@ def setUp(self):
         self.temp_dir = tempfile.TemporaryDirectory()
         self.csv_path = os.path.join(self.temp_dir.name, 'output.csv')
         self.netcdf_path = os.path.join(self.temp_dir.name, 'output.nc')
-        
+
     def tearDown(self):
         # Clean up temporary directory
         self.temp_dir.cleanup()
@@ -42,7 +43,7 @@ def test_convert_to_netcdf(self):
         data_output = DataOutput(self.df, args)
         data_output._convert_to_netcdf()
         self.assertTrue(os.path.exists(self.netcdf_path))
-        
+
         # Load the NetCDF file to check the attributes
         ds = xr.open_dataset(self.netcdf_path)
         self.assertEqual(ds['ENV.temperature'].attrs['units'], 'K')
@@ -56,7 +57,7 @@ def test_output_csv(self):
         data_output = DataOutput(self.df, args)
         data_output.output()
         self.assertTrue(os.path.exists(self.csv_path))
-        
+
         # Check the contents of the CSV file
         output_df = pd.read_csv(self.csv_path)
         expected_columns = ['ENV.temperature.K', 'ENV.pressure.Pa', 'ENV.number_density_air.kg -m3', 'time.s']
@@ -67,7 +68,7 @@ def test_output_netcdf(self):
         data_output = DataOutput(self.df, args)
         data_output.output()
         self.assertTrue(os.path.exists(self.netcdf_path))
-        
+
         # Check the contents of the NetCDF file
         ds = xr.open_dataset(self.netcdf_path)
         self.assertEqual(ds['ENV.temperature'].attrs['units'], 'K')
@@ -76,5 +77,6 @@ def test_output_netcdf(self):
         self.assertEqual(ds['time'].attrs['units'], 's')
         ds.close()
 
+
 if __name__ == '__main__':
     unittest.main()