Remove all redundant music_box_ from file names and updated referen…

…ces [Issue #177]

src/acom_music_box/__init__.py

@@ -7,16 +7,16 @@
 __version__ = "2.1.1"
 
 from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
-from .music_box_species import Species
-from .music_box_product import Product
-from .music_box_reactant import Reactant
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_species_list import SpeciesList
-from .music_box_model_options import BoxModelOptions
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_reaction_rate import ReactionRate
-from .music_box_conditions import Conditions
+from species import Species
+from product import Product
+from reactant import Reactant
+from reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from species_list import SpeciesList
+from model_options import BoxModelOptions
+from species_concentration import SpeciesConcentration
+from reaction_rate import ReactionRate
+from conditions import Conditions
 
-from .music_box_evolving_conditions import EvolvingConditions
+from evolving_conditions import EvolvingConditions
 from .music_box import MusicBox
 

src/acom_music_box/music_box_conditions.py → src/acom_music_box/conditions.py

@@ -1,9 +1,9 @@
 import csv
 import os
 from typing import List
-from .music_box_reaction_rate import ReactionRate
-from .music_box_species import Species
-from .music_box_species_concentration import SpeciesConcentration
+from reaction_rate import ReactionRate
+from species import Species
+from species_concentration import SpeciesConcentration
 from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
 
 

src/acom_music_box/music_box_evolving_conditions.py → src/acom_music_box/evolving_conditions.py

@@ -1,9 +1,9 @@
 import csv
 import os
 from typing import List
-from .music_box_conditions import Conditions
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_reaction_rate import ReactionRate
+from conditions import Conditions
+from species_concentration import SpeciesConcentration
+from reaction_rate import ReactionRate
 
 
 class EvolvingConditions:

src/acom_music_box/music_box.py

@@ -4,12 +4,12 @@
 import logging
 logger = logging.getLogger(__name__)
 
-from .music_box_evolving_conditions import EvolvingConditions
-from .music_box_reaction_list import ReactionList
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_species_list import SpeciesList
-from .music_box_model_options import BoxModelOptions
-from .music_box_conditions import Conditions
+from evolving_conditions import EvolvingConditions
+from reaction_list import ReactionList
+from reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from species_list import SpeciesList
+from model_options import BoxModelOptions
+from conditions import Conditions
 
 import csv
 import musica

src/acom_music_box/music_box_reaction_list.py → src/acom_music_box/reaction_list.py

@@ -1,9 +1,9 @@
 import os
 import json
 from typing import List
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_reactant import Reactant
-from .music_box_product import Product
+from reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from reactant import Reactant
+from product import Product
 
 class ReactionList:
     """

src/acom_music_box/music_box_species_list.py → src/acom_music_box/species_list.py

@@ -1,7 +1,7 @@
 import json
 import os
 from typing import List
-from .music_box_species import Species
+from species import Species
 
 class SpeciesList:
     """