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@RichardBruskiewich
RichardBruskiewich committed Jun 22, 2023
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4 changes: 2 additions & 2 deletions docs/about/index.md
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- [**Biomedical Data Translator User Interface Development**](../architecture/ui) (NCATS Contract #75N95021P00636)

- [**Knowledge Providers:**](../architecture/kp)
- [**Knowledge Providers:**](../architecture/kp/index.md)

| NIH Grant No. | Team |
|-----------------|-------------------------------------|
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| OT2TR003445 | [Service Provider]() |
| OT2TR003422 | [Text Mining Provider]() |

- [**Autonomous Relay Agents:**](../architecture/ara.md)
- [**Autonomous Relay Agents:**](../architecture/ara/index.md)

| NIH Grant No. | Team |
|---------------|-----------------------|
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# Autonomous Relay Agent

## Overview

Translator "Autonomous Relay Agents" (ARAs) build build upon the knowledge contributed by KPs by way of reasoning and inference and in response to user-defined queries. ARAs also apply scoring-and-ranking algorithms to query results in order to assist with user interpretation and evaluation of answers.

## Tutorials

* [Autonomous Relay Agent usage tutorials](../../guide-for-developers/tutorials/index.md)

## Existing Translator ARA's

| Team | Name | Documentation | Github Repository |
|---------------------------------------------------------------------------------------|--------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------|
| [Ranking Agent](https://github.com/NCATSTranslator/Translator-All/wiki/Ranking-Agent) | Ranking Agent ('Aragorn') | [Aragorn Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/ARAGORN) | [ranking-agent/aragorn](https://github.com/ranking-agent/aragorn) |
| [Expander Agent](../../teams/expander-agent) | ARAX | [ARAX Page](arax)<br/>[ARAX Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/ARAX) | [RTXteam/RTX](https://github.com/RTXteam/RTX) |
| (im)Proving Agent | Scalable Precision Medicine<br>Oriented Knowledge Engine ('SPOKE') | [SPOKE Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/imProving-Agent) | [BaranziniLab/PSEV](https://github.com/BaranziniLab/PSEV) |
| Explorer Agent | [BioThings Explorer](https://biothings.io/explorer/) | [BioThings Explorer Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-Explorer-(BTE)) | [biothings/biothings_explorer](https://github.com/biothings/biothings_explorer) |
| Explanatory Agent | xARA | [xARA Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Explanatory-Agent) ||
| Unsecret Agent | Unsecret Agent | [Unsecret Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/UnSecret-Agent) | [webyrd/mediKanren](https://github.com/webyrd/mediKanren) |
4 changes: 2 additions & 2 deletions docs/architecture/index.md
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3. [Workflow Runner](workflows.md)
4. [Translator Reasoner Application Programming Interface (TRAPI)](trapi.md)
5. [Translator SmartAPI Registry](registry.md)
6. [Autonomous Relay Agents (ARAs)](ara.md)
7. [Knowledge Providers (KPs)](kp.md)
6. [Autonomous Relay Agents (ARAs)](ara/index.md)
7. [Knowledge Providers (KPs)](kp/index.md)

Tying together the above components are the activities and outputs of the Translator
[Standards and Reference Implementation ("SRI")](sri.md) project team.
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# Knowledge Provider

## Overview

Knowledge Providers (KPs) contribute domain-specific, high-value information abstracted from one or more underlying “knowledge sources,” which may be “raw” data or information that has been abstracted from the data

## Tutorials

* [Knowledge Provider tutorials](../../guide-for-developers/tutorials/index.md)

## Existing Translator KPs

| Team | Name | Documentation | Github Repository |
|-------------------------------------------------------------------------------------------------|--------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------|-----------------------------------------------------------------------------------------------------------------|
| Molecular Data Provider | Molecular Data Provider ('MolePro') | [Molecular Data Provider Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Molecular-Data-Provider) | [broadinstitute/molecular-data-provider](https://github.com/broadinstitute/molecular-data-provider) |
| BioThings | Service Provider | [Service Provider Page](service_provider.md)<br/>[Service Provider Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Service-Provider) | [biothings/BioThings_Explorer_TRAPI](https://github.com/biothings/BioThings_Explorer_TRAPI) |
| Text Mining Provider | Text Mining Provider | [Targeted Text-Mined Association KG Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Targeted-Text-Mined-Association-KG) | [NCATSTranslator/Text-Mining-Provider-Roadmap](https://github.com/NCATSTranslator/Text-Mining-Provider-Roadmap) |
| Clinical Data Provider | Columbia Open Health Data ('COHD') | [COHD KP Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/COHD-KP) | |
| Clinical Data Provider | OpenPredict | [OpenPredict KP Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/OpenPredict-KP) | |
| Clinical Data Provider | Knowledge Collaboratory | [Knowledge Collaboratory KP Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Knowledge-Collaboratory-KP) | |
| Exposures Provider | Integrated Clinical and Environmental Exposures Service (ICEES KG) | [ICEES+ and ICEES KG Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Exposures-Provider-ICEES) | |
| Exposures Provider | Causal Activity Model (CAM) KP | [CAM KP Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Exposures-Provider-CAM-AOP) | |
| Multiomics Provider | BigGIM II-DrugResponse | [BigGIM II-DrugResponse Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Big-GIM-II:-Drug-Response-KP) | |
| Multiomics Provider | BigGIM II-Tumor gene mutation | [BigGIM II-TumorGeneMutation Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Big-GIM-II:-Tumor-gene-mutation-KP) | |
| Multiomics Provider | Multiomics Wellness | [Multiomics Wellness Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Wellness-KP) | |
| Multiomics Provider | EHR Clinical Risk | [EHR Clinical Risk Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/EHR-Risk-KP) | |
| Multiomics Provider | Clinical Trials | | [Hadlock-Lab/Multiomics_ClinicalTrials_KP](https://github.com/Hadlock-Lab/Multiomics_ClinicalTrials_KP) |
| Expander Agent | RTX-KG2 | [RTX-KG2 Page](rtx-kg2)<br/>[RTX-KG2 Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/KG2) | [RTXteam/RTX-KG2](https://github.com/RTXteam/RTX-KG2) |
| [WikiPathways](https://github.com/wikipathways) | Pathway Figure OCR | [Pathway Figure OCR Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Pathway-Figure-OCR-(PFOCR)) | [wikipathways/pathway-figure-ocr](https://github.com/wikipathways/pathway-figure-ocr) |
| [Exposures Provider](https://github.com/NCATSTranslator/Translator-All/wiki/Exposures-Provider) | ICEES | [ICEES Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Exposures-Provider-ICEES) | [NCATS-Tangerine/icees-api](https://github.com/NCATS-Tangerine/icees-api) |
| [Exposures Provider](https://github.com/NCATSTranslator/Translator-All/wiki/Exposures-Provider) | Causal Activity Model (CAM) KP | [CAM-KP Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/CAM-KP) | [NCATS-Tangerine/cam-kp-api](https://github.com/NCATS-Tangerine/cam-kp-api) |
| Genetics Provider | Genetics Provider | [Genetics Provider Wiki](https://github.com/NCATSTranslator/Translator-All/wiki/Genetics-Knowledge-Provider) | [broadinstitute/genetics-kp-dev](https://github.com/broadinstitute/genetics-kp-dev) |
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