Add debug statement in 'findDataPids' method in MDQEngine #209
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| name: Java Maven Build, Test, and Publish | |
| on: | |
| push: | |
| branches: | |
| - feature* | |
| - bugfix* | |
| - develop | |
| tags: [ 'v.*.*.*' ] | |
| env: | |
| # Use docker.io for Docker Hub if empty | |
| REGISTRY: ghcr.io | |
| # github.repository as <account>/<repo> | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| jobs: | |
| maven-build: | |
| name: Maven Build and Test | |
| runs-on: ubuntu-latest | |
| outputs: | |
| version: ${{ steps.get_version.outputs.version }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up JDK | |
| uses: actions/setup-java@v3 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| cache: 'maven' | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install linux deps | |
| run: sudo apt-get install -y libcurl4-openssl-dev | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: Install python dependencies | |
| run: pip install jep==3.9 # Install the jep library | |
| - name: Set JEP_LIBRARY_PATH environment variable | |
| run: | | |
| echo "JEP_LIBRARY_PATH=$(python -c 'import site; print(site.getsitepackages()[0])')/jep" >> $GITHUB_ENV | |
| - name: test | |
| run: | | |
| echo $JEP_LIBRARY_PATH | |
| ls $JEP_LIBRARY_PATH | |
| - name: Install deps | |
| run: Rscript -e 'install.packages(c("httr", "jsonlite", "remotes"))' | |
| - name: Install metadig | |
| run: Rscript -e 'remotes::install_github("nceas/metadig-r")' | |
| - name: Create /opt/local directory | |
| run: mkdir -p /opt/local/metadig | |
| - name: Copy properties file to /opt/local | |
| run: cp helm/metadig-controller/config.dev/metadig.properties /opt/local/metadig/metadig.properties | |
| - name: Extract Maven project version | |
| run: echo "version="$(mvn -q -Dexec.executable=echo -Dexec.args='${project.version}' --non-recursive exec:exec) >> $GITHUB_OUTPUT | |
| id: get_version | |
| #- name: Show extracted Maven project version | |
| #run: echo "Version from pom: " ${{ steps.get_version.outputs.version }} | |
| - name: Build and Test | |
| run: mvn --batch-mode --update-snapshots test | |
| - name: Package | |
| run: mvn --batch-mode --update-snapshots -DskipTests=true package | |
| - uses: actions/cache@v3 | |
| with: | |
| path: . | |
| key: builddir-${{ github.run_id }} | |
| docker-publish: | |
| name: Docker Build and Publish | |
| if: github.ref_name == 'develop' || startsWith(github.ref, 'refs/tags/v') || startsWith(github.ref_name, 'feature') | |
| needs: maven-build | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - uses: actions/cache@v3 | |
| with: | |
| path: . | |
| key: builddir-${{ github.run_id }} | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| # Login against a Docker registry except on PR | |
| # https://github.com/docker/login-action | |
| - name: Log into registry ${{ env.REGISTRY }} | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| # SCHEDULER Extract metadata (tags, labels) for Docker | |
| # https://github.com/docker/metadata-action | |
| - name: Extract Docker metadata for scheduler | |
| id: metasched | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ${{ env.REGISTRY }}/nceas/metadig-scheduler | |
| # SCHEDULER Build and push Docker image with Buildx (don't push on PR) | |
| # https://github.com/docker/build-push-action | |
| - name: Build and push scheduler image | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| file: Docker/metadig-scheduler/Dockerfile | |
| build-args: | | |
| TAG=${{ steps.metasched.outputs.labels['org.opencontainers.image.version'] }} | |
| ENGINE_TAG=${{needs.maven-build.outputs.version}} | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.metasched.outputs.tags }} | |
| labels: ${{ steps.metasched.outputs.labels }} | |
| # SCORER Extract metadata (tags, labels) for Docker | |
| # https://github.com/docker/metadata-action | |
| - name: Extract Docker metadata for scorer | |
| id: metascor | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ${{ env.REGISTRY }}/nceas/metadig-scorer | |
| # SCORER Build and push Docker image with Buildx (don't push on PR) | |
| # https://github.com/docker/build-push-action | |
| - name: Build and push scorer image | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| file: Docker/metadig-scorer/Dockerfile | |
| build-args: | | |
| TAG=${{ steps.metascor.outputs.labels['org.opencontainers.image.version'] }} | |
| ENGINE_TAG=${{needs.maven-build.outputs.version}} | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.metascor.outputs.tags }} | |
| labels: ${{ steps.metascor.outputs.labels }} | |
| # WORKER Extract metadata (tags, labels) for Docker | |
| # https://github.com/docker/metadata-action | |
| - name: Extract Docker metadata for worker | |
| id: metawor | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ${{ env.REGISTRY }}/nceas/metadig-worker | |
| # WORKER Build and push Docker image with Buildx (don't push on PR) | |
| # https://github.com/docker/build-push-action | |
| - name: Build and push worker image | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| file: Docker/metadig-worker/Dockerfile | |
| build-args: | | |
| TAG=${{ steps.metawor.outputs.labels['org.opencontainers.image.version'] }} | |
| ENGINE_TAG=${{needs.maven-build.outputs.version}} | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.metawor.outputs.tags }} | |
| labels: ${{ steps.metawor.outputs.labels }} |