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Update 2024_??_EMBL_image_data_formats.md
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tischi authored Oct 1, 2024
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Expand Up @@ -54,15 +54,25 @@ Dear Trainers, please consider checking these [teaching tips](https://github.com

### Modules


#### Day 1: Fiji / NGFF Converter / Bftools

Trainers: Christian Tischer, Bugra Oezdemir, Alexandra Zakieva(?)

1. [Image data formats](https://neubias.github.io/training-resources/image_file_formats/index.html)
- Trainer Fiji: Christian Tischer, Alexandra Zakieva ?
- Trainer python: Bugra Oezdemir, Felix Schneider ?
1. [TIFF](https://neubias.github.io/training-resources/tiff/index.html)
- Trainer Fiji: Bugra Oezdemir, Alexandra Zakieva ?
- Trainer python: Bugra Oezdemir / Felix Schneider ?
1. [Big image data formats](https://neubias.github.io/training-resources/big_image_file_formats/index.html)
- Trainer Fiji: Christian Tischer, Alexandra Zakieva ?
- Trainer python: Felix Schneider ?
- TODO: Implementation Lazy load from TIFF stack in python
- TODO: Show opening one HDF5 flavour (BDV, Imaris)
- https://imaris.oxinst.com/support/imaris-file-format
- Python implementation? => Napari IMS support?
1. [OME-TIFF](https://neubias.github.io/training-resources/tiff/index.html)
- TODO: https://github.com/NEUBIAS/training-resources/issues/729
- TODO: ...
1. [OME-Zarr](https://neubias.github.io/training-resources/ome_zarr/index.html)
- Trainer Fiji: Christian Tischer, Alexandra Zakieva ?
- Trainer python: Bugra Oezdemir ?
- TODO: we know, many (see issues)

#### Day 2: Python

Same modules as first day but with python implementations.

Trainers: Bugra Oezdemir, Felix Schneider

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