Add https://zenodo.org/records/12547566

resources/nfdi4bioimage.yml

@@ -8756,3 +8756,73 @@ resources:
   url:
   - https://zenodo.org/records/14197622
   - https://doi.org/10.5281/zenodo.14197622
+
+- authors: "Fabig, Gunar, Jannasch, Anett, Okafornta, Chukwuebuka, Boissonnet, Tom,\
+    \ Schmidt, Christian, Bortolomeazzi, Michele, Fuchs, Vanessa Aphaia Fiona, Koeckert,\
+    \ Maria, Poddar, Aayush, Vogel, Martin, Schwarzbach, Hanna-Margareta, Vogelsang,\
+    \ Andy, Gerlach, Michael, Nobst, Anja, M\xFCller-Reichert, Thomas, Tulok, Silke"
+  description: 'This are a two Key-Value pair templates used for the annotation of datasets
+    in OMERO. They are tailored for light- and electron microcopy data for all research
+    projects of the research group of Prof. T. Mueller-Reichert.  All members of
+    the Core Facility Cellular Imaging agreed for using these templates to annotate
+    data in OMERO. Furthermore, there are a corresponding public example datasets used
+    in the publication "Setting up an institutional OMERO environment for bioimage data:
+    perspectives from both facility staff and users" and are available here:
+
+    https://omero.med.tu-dresden.de/webclient/?show=dataset-1552 --> for lattice-light
+    sheet microscopy
+
+    https://omero.med.tu-dresden.de/webclient/?show=dataset-1555--> for electron
+    microscopy data
+
+    That templates are based on the REMBI recommendations (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8606015)
+    and were developed during the PoL-Bio-Image Analysis Symposium in Dresden Aug 28th-
+    Sept 1st in 2023 and further adapeted during the usage of OMERO. 
+
+    With every template it is possible to create a csv-file, that can be used to annotate
+    a dataset in OMERO using the annotation script (https://github.com/ome/omero-scripts/blob/develop/omero/annotation_scripts/).
+
+    How to use:
+
+
+    fill the template with metadata
+
+    select and copy the data range containing the Keys and Values
+
+    open a new excel sheet and paste transpose in cell A1
+
+    Important: cell A1 contains always the name ''dataset'' and cell A2 contains the
+    exact name of the dataset, which should be annotated in OMERO
+
+    save the new excel sheet in csv-file (comma separated values) format
+
+
+    Examples can be seen in sheet 3 ''csv_TOMO'' and sheet 5 csv_TEM''.
+
+    Important note: The code has to be 8-Bit UCS transformation format (UTF-8) otherwise
+    several characters (for example µ, %,°) might be not able to decode by
+    the annotation script. We encountered this issue with old Microsoft-Office versions
+    (MS Office 2016). 
+
+    Note: By filling the values in the excel sheet, avoid the usage of comma as decimal
+    delimiter.
+
+    See cross reference:
+
+    10.5281/zenodo.12546808 Key-Value pair template for annotation of datasets
+    in OMERO (PERIKLES study)
+
+    10.5281/zenodo.12578084 Key-Value pair template for annotation in OMERO for light
+    microscopy data acquired with AxioScan7 - Core Facility Cellular Imaging (CFCI)
+
+     '
+  license: cc-by-4.0
+  name: "Key-Value pair template for annotation of datasets in OMERO for light- and\
+    \ electron microscopy data within the research group of Prof. M\xFCller-Reichert"
+  num_downloads: 12
+  publication_date: '2024-06-26'
+  submission_date: '2024-11-27T15:20:23.287340'
+  url:
+  - https://zenodo.org/records/12547566
+  - https://doi.org/10.5281/zenodo.12547566
+