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Add try-except blocks to handle JSON decoding errors in Zenodo scripts. #560

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Add try-except blocks to handle JSON decoding errors in Zenodo scripts. #560

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A try-except block was added to handle JSON decoding errors so that t…
github-actions[bot] Dec 17, 2024
d3b590b
urls = [zen
github-actions[bot] Dec 17, 2024
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12 changes: 7 additions & 5 deletions scripts/auto-add-from-zenodo-communities.py
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Original file line number Diff line number Diff line change
Expand Up @@ -50,10 +50,13 @@ def main():
response = requests.get('https://zenodo.org/api/records',
params={'communities': community,
'access_token': token})
online_data = response.json()
hits = online_data["hits"]["hits"]
urls = [u["links"]["self_html"] for u in hits]

try:
online_data = response.json()
hits = online_data["hits"]["hits"]
urls = [u["links"]["self_html"] for u in hits]
except requests.exceptions.JSONDecodeError:
print(f"Error decoding JSON for community: {community}")
continue

# compare which new is not in old

Expand Down Expand Up @@ -100,6 +103,5 @@ def main():




if __name__ == "__main__":
main()
38 changes: 5 additions & 33 deletions scripts/generate_link_lists.py
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Original file line number Diff line number Diff line change
Expand Up @@ -321,7 +321,11 @@ def read_zenodo(record):

# Download the file
response = requests.get(url)
data = response.json()
try:
data = response.json()
except json.JSONDecodeError:
data = {}

return data


Expand Down Expand Up @@ -495,35 +499,3 @@ def complete_zenodo_data(zenodo_url):
"""
zenodo_data = read_zenodo(zenodo_url)
entry = {}
urls = [zenodo_url]

if 'doi_url' in zenodo_data.keys():
doi_url = zenodo_data['doi_url']

# Add DOI URL to the URLs list if it's not already there
if doi_url not in urls:
urls.append(doi_url)
entry['url'] = urls

if 'metadata' in zenodo_data.keys():
metadata = zenodo_data['metadata']
# Update entry with Zenodo metadata and statistics
entry['name'] = metadata['title']
if 'publication_date' in metadata.keys():
entry['publication_date'] = metadata['publication_date']
if 'description' in metadata.keys():
entry['description'] = remove_html_tags(metadata['description'])
if 'creators' in metadata.keys():
creators = metadata['creators']
entry['authors'] = [c['name'] for c in creators]
if 'license' in metadata.keys():
entry['license'] = metadata['license']['id']

if 'stats' in zenodo_data.keys():
entry['num_downloads'] = zenodo_data['stats']['downloads']

return entry


if __name__ == "__main__":
main()