Merge pull request #162 from NHS-NGS/cnv_tiering_bugfix

replaced int version parsing with hard check
NHS-NGS · Apr 9, 2020 · 6ab8364 · 6ab8364
2 parents 5a90c48 + 54428d8
commit 6ab8364
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/gelweb/gel2mdt/database_utils/case_handler.py b/gelweb/gel2mdt/database_utils/case_handler.py
@@ -292,7 +292,7 @@ def parse_ig_variants(self, ig_obj, genome_build, variant_object_count, case_var
         return ig_obj, case_variant_list, variant_object_count
 
     def parse_ig_svs(self, ig_obj, genome_build, case_sv_list):
-        if int(ig_obj.softwareVersions['gel-tiering'].replace('.', '')) <= 1000:
+        if ig_obj.softwareVersions['gel-tiering'] == '1.0.0':
             for variant in ig_obj.structuralVariants:
                 variant.case_variant = False
             return ig_obj, case_sv_list
@@ -318,7 +318,7 @@ def parse_ig_svs(self, ig_obj, genome_build, case_sv_list):
         return ig_obj, case_sv_list
 
     def parse_ig_strs(self, ig_obj, genome_build, case_str_list):
-        if int(ig_obj.softwareVersions['gel-tiering'].replace('.', '')) <= 1000:
+        if ig_obj.softwareVersions['gel-tiering'] ==  '1.0.0':
             for variant in ig_obj.shortTandemRepeats:
                 variant.case_variant = False
             return ig_obj, case_str_list