By using PacBio HiFi and Hi-C data only we were able to generate phased chromosome-level assembly of a tetraploid potato cultivar. This repository contains scripts and supplementary information on the assembly and gene annotation process.
Genome assembly and annotation files are available at Zenodo and desiree.nib.si
Commands used to generate the assembly and annotation are located in scripts.
assembly.txt- assembly of initial phased sets of contigs with hifiasmscaffolding.txt- scaffolding to chromosomes with YaHsannotation.txt- gene annotation pipeline
If you are using this genome in your research, please cite:
Haplotype-resolved genome assembly of the tetraploid potato cultivar Desiree
Godec T, Beier S, Rodriguez-Granados N, Sasidharan R, Abdelhakim L, Teige M, Usadel B, Gruden K, Petek M,
bioRxiv 2025.01.14.631659
doi: https://doi.org/10.1101/2025.01.14.631659