Staging #45
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| # # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| --- | |
| name: Deploy Toolkit | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| deploy_toolkit: | |
| runs-on: ubuntu-latest | |
| # Only restrict concurrency for non-PR jobs | |
| concurrency: | |
| group: deploy-staging-${{ github.event_name != 'pull_request' || github.run_id }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| contents: write | |
| pages: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up R and Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| with: | |
| pandoc-version: 'latest' | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get install -y libudunits2-dev libgdal-dev | |
| sudo apt-get install libmagick++-dev | |
| - name: Install R packages | |
| run: | | |
| R -e 'install.packages(c("bookdown", "rmarkdown", "plotly", "shiny", "tidycensus", "tidyverse", "viridis", "ggmap", "ggplot2", "maps", "dplyr", "knitr", "latticeExtra", "pals", "classInt", "sf", "udunits2", "tmap", "lubridate", "gifski", "magick", "cowplot"))' | |
| R -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager"); BiocManager::install("Biobase")' | |
| - name: Build site for staging branch | |
| run: R -e 'bookdown::render_book(".", "bookdown::gitbook")' | |
| - name: Debug Repository State | |
| run: | | |
| git status | |
| ls -la | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: ./docs |