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Merge pull request #45 from NIEHS/staging-internal
Staging internal
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,82 +1,82 @@ | ||
| # # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| # --- | ||
| # name: Deploy Toolkit | ||
| --- | ||
| name: Deploy Toolkit | ||
|
|
||
| # on: | ||
| # push: | ||
| # branches: [main, master] | ||
| # pull_request: | ||
| # branches: [main, master] | ||
| # release: | ||
| # types: [published] | ||
| # workflow_dispatch: | ||
| on: | ||
| push: | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: [main, master] | ||
| release: | ||
| types: [published] | ||
| workflow_dispatch: | ||
|
|
||
| # jobs: | ||
| # deploy_toolkit: | ||
| # runs-on: ubuntu-latest | ||
| jobs: | ||
| deploy_toolkit: | ||
| runs-on: ubuntu-latest | ||
|
|
||
| # # Only restrict concurrency for non-PR jobs | ||
| # concurrency: | ||
| # group: bookdown-${{ github.event_name != 'pull_request' || github.run_id }} | ||
| # Only restrict concurrency for non-PR jobs | ||
| concurrency: | ||
| group: bookdown-${{ github.event_name != 'pull_request' || github.run_id }} | ||
|
|
||
| # env: | ||
| # GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| # permissions: | ||
| # contents: write | ||
| permissions: | ||
| contents: write | ||
|
|
||
| # steps: | ||
| # - uses: actions/checkout@v4 | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
|
|
||
| # - uses: r-lib/actions/setup-pandoc@v2 | ||
| - uses: r-lib/actions/setup-pandoc@v2 | ||
|
|
||
| # - uses: r-lib/actions/setup-r@v2 | ||
| # with: | ||
| # use-public-rspm: true | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
|
||
| # - name: Install libudunits2 and libmagick | ||
| # run: | | ||
| # sudo apt-get install -y libudunits2-dev libgdal-dev | ||
| # sudo apt-get install libmagick++-dev | ||
| - name: Install libudunits2 and libmagick | ||
| run: | | ||
| sudo apt-get install -y libudunits2-dev libgdal-dev | ||
| sudo apt-get install libmagick++-dev | ||
| # - name: Build site | ||
| # run: | | ||
| # install.packages(c( | ||
| # "bookdown", | ||
| # "rmarkdown", | ||
| # "plotly", | ||
| # "shiny", | ||
| # "tidycensus", | ||
| # "tidyverse", | ||
| # "viridis", | ||
| # "ggmap", | ||
| # "ggplot2", | ||
| # "maps", | ||
| # "dplyr", | ||
| # "knitr", | ||
| # "latticeExtra", | ||
| # "pals", | ||
| # "classInt", | ||
| # "sf", | ||
| # "udunits2", | ||
| # "tmap", | ||
| # "lubridate", | ||
| # "gifski", | ||
| # "magick", | ||
| # "cowplot", | ||
| # "BiocManager" | ||
| # ), | ||
| # dependencies = TRUE | ||
| # ) | ||
| # BiocManager::install("Biobase") | ||
| # bookdown::render_book() | ||
| # shell: Rscript {0} | ||
| - name: Build site | ||
| run: | | ||
| install.packages(c( | ||
| "bookdown", | ||
| "rmarkdown", | ||
| "plotly", | ||
| "shiny", | ||
| "tidycensus", | ||
| "tidyverse", | ||
| "viridis", | ||
| "ggmap", | ||
| "ggplot2", | ||
| "maps", | ||
| "dplyr", | ||
| "knitr", | ||
| "latticeExtra", | ||
| "pals", | ||
| "classInt", | ||
| "sf", | ||
| "udunits2", | ||
| "tmap", | ||
| "lubridate", | ||
| "gifski", | ||
| "magick", | ||
| "cowplot", | ||
| "BiocManager" | ||
| ), | ||
| dependencies = TRUE | ||
| ) | ||
| BiocManager::install("Biobase") | ||
| bookdown::render_book() | ||
| shell: Rscript {0} | ||
|
|
||
| # - name: Deploy to GitHub pages 🚀 | ||
| # if: github.event_name != 'pull_request' | ||
| # uses: JamesIves/[email protected] | ||
| # with: | ||
| # clean: false | ||
| # branch: gh-pages | ||
| # folder: docs | ||
| - name: Deploy to GitHub pages 🚀 | ||
| if: github.event_name != 'pull_request' | ||
| uses: JamesIves/[email protected] | ||
| with: | ||
| clean: false | ||
| branch: gh-pages | ||
| folder: docs |