Merge pull request #67 from NIEHS/mm-live-0815

Mm live 0815

.github/workflows/check-super-linter.yml

@@ -22,5 +22,5 @@ jobs:
       - name: Run Super-Linter
         uses: github/super-linter@v4
         env:
-          FILTER_REGEX_EXCLUDE: .*/docs/.*|.*/.github/workflows/.*
+          FILTER_REGEX_EXCLUDE: .*/docs/.*|.*/.github/workflows/.*|.*/dataset/.*
           LINTR_ERROR_ON_LINT: true

.gitignore

@@ -2,11 +2,11 @@
 .Rhistory
 .RData
 .Ruserdata
-dataset/
 *.csv
 shap_files/
 _book/
 _bookdown_files/
 _main_files
 .DS_Store
-docs/
+docs/
+dataset/narr/air.2m_2021.nc

chapters/01-00-spatial-data-foundations.Rmd

@@ -6,7 +6,7 @@
 
 This unit provides background, guidance and example code for working with different types of geospatial data common in environmental health research. This unit is intended as a starting point for users with less familiarity with geospatial data and geospatial analysis methods in environmental health using `R`.
 
-```{r, include = FALSE, echo = FALSE, eval = FALSE, warning = FALSE}
+```{r, include = FALSE, echo = FALSE, warning = FALSE}
 install.packages("BiocManager", quiet = TRUE)
 library(BiocManager)
 BiocManager::install("Biobase", update = FALSE, ask = FALSE)

chapters/01-01-getting-started.Rmd

@@ -79,7 +79,7 @@ The following code installs and imports the packages used in this unit:
 Installing and importing new packages may required `R` to restart.
 :::
 
-```{r, eval = FALSE}
+```{r, warning = FALSE}
 vignette_packages <- c(
   "dplyr", "ggplot2", "ggpubr", "sf",
   "terra", "tidyterra", "utils"