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This repository has been archived by the owner on Sep 20, 2024. It is now read-only.

NIH-NCPI/FHIR-CAT-June22

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NCPI FHIR Code-A-Thon June22

Use Case

A research user wants to use PCA to compare tissue-specific gene expression data from open and “registered” access datasets.

Kids First

Details on KF data and access are here.

AnVIL

Details for GTeX on AnVIL data and access are here.

INCLUDE DCC

Details for INCLUDE data and access are here.

dbGAP, synthea synthetic data, genomic reporting, and other use cases

A repo with pre-fetched FHIR data, and data model classes, that handle (de)serialization and allow you to work with FHIR data in a Pythonic way is here.

More details

Can be found here.

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Technical interop pilot using RNASeq data

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