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DRS preference in File profile #60

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merged 3 commits into from
Oct 28, 2024
Merged

DRS preference in File profile #60

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c4d8e29
:zap: added DRS preference to File profile
a-l-holmes Sep 30, 2024
63b64ab
:recycle: created DRS Profile and allowed multiple attachments in NCP…
a-l-holmes Oct 1, 2024
6936d85
:construction: fine-tuned the slicing rules for files with DRS
a-l-holmes Oct 3, 2024
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32 changes: 31 additions & 1 deletion input/fsh/modules/files.fsh
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Original file line number Diff line number Diff line change
Expand Up @@ -111,6 +111,20 @@ Description: "Provides a list of hashes for confirming file transfers"
* extension contains HashType named hash-type 1..1
* extension[hash-type] ^short = "Algorithm used to calculate the hash (and size, where applicable)"

Invariant: must-be-drs-uri
Description: "attachment.url must start with ^drs://. A drs:// hostname-based URI, as defined in the DRS documentation, that tells clients how to access this object. The intent of this field is to make DRS objects self-contained, and therefore easier for clients to store and pass around. For example, if you arrive at this DRS JSON by resolving a compact identifier-based DRS URI, the `self_uri` presents you with a hostname and properly encoded DRS ID for use in subsequent `access` endpoint calls."
Expression: "$this.url.matches('^drs://.*')"
Severity: #error

Profile: DRSAttachment
Parent: Attachment
Id: ncpi-drs-attachment
Title: "DRS Attachment"
Description: "A FHIR Attachment with a DRS url."
* ^version = "0.1.0"
* ^status = #draft
* obeys must-be-drs-uri

/** TODO Add Related file to metadata - AH 2024-07-30 */

Profile: NcpiFile
Expand Down Expand Up @@ -139,4 +153,20 @@ Description: "Information about a file related to a research participant"
* description ^short = "A description of the file"
* type 0..1 /*File Type*/
* type from edam-ontology-terms (extensible)
* type ^short = "The type of data contained in this file."
* type ^short = "The type of data contained in this file."

Profile: NcpiDRSFile
Parent: NcpiFile
Id: ncpi-drs-file
Title: "NCPI DRS File"
Description: "Information about a DRS file related to a research participant"
* ^version = "0.0.1"
* ^status = #draft
* content ^slicing.discriminator.type = #pattern
* content ^slicing.discriminator.path = "code"
* content ^slicing.rules = #openAtEnd
* content ^slicing.ordered = true
* content ^slicing.description = "Slicing pattern to make content.attachment require a DRS file type and allow other file types"
* content contains
DRS 1..1
* content[DRS].attachment only DRSAttachment
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