Added version info to each file

apace/ACEcode.m

@@ -2,6 +2,9 @@
 %
 % Maps active (non-zero) ACE parameters to a integer code
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 Code = [1 2 3];
 x    = sum( Code(abs(ACE)>0) );

apace/ACEfit.m

@@ -10,6 +10,9 @@
 % null hypothesis, and thus the pivotal test statistic is recommendated in
 % permutation test.
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 X = ACEfit_Par.X;
 Y = ACEfit_Par.Y;

apace/ACEfit_Boot.m

@@ -2,6 +2,9 @@
 %
 % Bootstrapping.
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 nB       = size(Boot_kin,1);
 Boot_kin = triu(Boot_kin);

apace/ACEfit_Boot_Parallel.m

@@ -2,6 +2,9 @@ function ACEfit_Boot_Parallel(ACEfit_Par,RunID)
 %
 % Parallel Computation.
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 nBt = ACEfit_Par.nBootPerRun;
 

apace/ACEfit_Boot_Parallel_Results.m

@@ -2,6 +2,9 @@ function ACEfit_Boot_Parallel_Results(ACEfit_Par)
 %
 % Merge together results of RunID.
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 mean_A  = zeros(ACEfit_Par.nBoot,1);
 wh2_A   = zeros(ACEfit_Par.nBoot,1);

apace/ACEfit_Perm.m

@@ -4,6 +4,9 @@
 %
 % Perm_label - Permutation relabeling
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 X  = ACEfit_Par.X;
 Y  = ACEfit_Par.Y;

apace/ACEfit_Perm_Parallel.m

@@ -2,6 +2,9 @@ function ACEfit_Perm_Parallel(ACEfit_Par,RunID)
 %
 % Parallel Computing.
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 nPm = ACEfit_Par.nPermPerRun;
 

apace/ACEfit_Perm_Parallel_Results.m

@@ -2,6 +2,9 @@ function ACEfit_Perm_Parallel_Results(ACEfit_Par)
 %
 % Merge together results of RunID.
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 mean_A  = zeros(ACEfit_Par.nPerm,1);
 wh2_A   = zeros(ACEfit_Par.nPerm,1);

apace/ACEfit_Results.m

@@ -1,5 +1,8 @@
 function ACEfit_Results(ACEfit_Par,varargin)
 % FORMAT ACEfit_Results(ACEfit_Par[,FWEalpha,FDRalpha])
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if nargin>=2
     FWEalpha = varargin{1};

apace/APACEsummary.m

@@ -5,6 +5,9 @@
 %
 % [Ests,CIs,Ps,Names] = APACEsummary(ACEfit_Par) - Also return values
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if nargin<=1
     StdOut = 1;

apace/AgHe_Method.m

@@ -7,6 +7,9 @@ function AgHe_Method(ACEfit_Par,varargin)
 %                                                  for permutation & bootstrap
 % AgHe_Method(ACEfit_Par,'_Norm',Palpha,Balpha)  - Save results with the suffix,
 %                                                  also set Perm & Bootstrap alpha
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if size(ACEfit_Par.Y,1)==1
     error('Aggregate heritability is designed for multiple phenotypes!')

apace/Boot_CIs.m

@@ -3,6 +3,9 @@ function Boot_CIs(ACEfit_Par,varargin)
 %
 % Generate Bootstrap CIs.
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if nargin>=2
     Balpha = varargin{1};

apace/Bootstrap_CI.m

@@ -5,6 +5,9 @@
 % ST     - bootstrap estimates and the original estimate
 % alpha  - level
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 % 1-alpha/2 quantile of the standard normal distribution
 ST_alpha = spm_invNcdf(1-alpha/2);

apace/CheckCIFTIfun.m

@@ -1,3 +1,7 @@
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
+
 function OK = CheckCIFTIfun(WBC)
 global CIFTI_OK
 if ~isempty(CIFTI_OK)

apace/CheckData.m

@@ -21,6 +21,9 @@
 %                 LoadData.m).
 % Vs.ImMks      - Information on mask data.
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 %
 % Fill-in defaults

apace/CreateBoot.m

@@ -7,6 +7,9 @@
 % nG3    - number of subjects or subject pairs or families in group 3
 % nBoot  - number of bootstrapping replicates
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 % Derive seed from time
 rng('shuffle');

apace/CreatePerm.m

@@ -6,6 +6,10 @@
 % nG2    - number of subjects or subject pairs in group 2
 % nPerm  - number of permutations
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
+
 if nPerm>mynchoosek(nG1+nG2,nG1)
     error('Too many permutations requested! Please set %d or a smaller number for ''nPerm''!',mynchoosek(nG1+nG2,nG1))
 end

apace/Dims.m

@@ -6,6 +6,9 @@
 % NIFTI header.
 % For CIFTI, input can be an cell array, and then a matrix with 7 columns is
 % returned with the cooresponding dimensional information.
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if isa(X,'nifti')
     if length(X)==1

apace/FileFormats.txt

@@ -1,3 +1,6 @@
+Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+         $Format:%ci$
+
 Input files for APACE can be specified in one of 4 general formats:
 
 1. String, the name of a text file of filepaths to nifti OR cifti

apace/FileType.m

@@ -9,6 +9,9 @@
 % by a Analyze image.
 %
 % For convenience, if a numeric variable is passed, it is classified as "MATRIX"
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 Type     = 'UNKOWN';
 CIFTIext = '';

apace/LRSD_ACE_VEC.m

@@ -13,6 +13,9 @@
 % hh      - Variance parameter estimate
 % hh*     - The parameter estimates of the possible models [E AE CE ACE]
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 [nElm,n]  = size(Res);
 nMZSD     = size(I_MZ,1);

apace/LoadData.m

@@ -2,6 +2,9 @@
 %
 %  Loads the data (actually, mostly already loaded)
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 switch Vs.FileType
 

apace/Mk_ZTZpinv.m

@@ -13,6 +13,9 @@
 %                          4*nOTW 4*nOTW                  4*nOTW
 %         2*(nDZSD+nSibSD)+4*nOTW 4*nOTW               2*(n^2-n) ];
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 pinvZTZ    = cell(4,1);
 

apace/Ndim.m

@@ -1,6 +1,9 @@
 function nd = Ndim(X)
 % Generic support function
 % Returns the number of non-trivial dimensions
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if isa(X,'nifti')
     nd = zeros(length(X),1);

apace/PrepData.m

@@ -2,6 +2,9 @@
 %
 % Updata 'ACEfit_Par' with the input data information
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 % Start of "ACEfit" computations; shuffle into expected order.
 ACEfit_Par    = Reorder(ACEfit_Par);

apace/PrepParallel.m

@@ -2,6 +2,9 @@ function PrepParallel(ACEfit_Par)
 %
 % Update the input structure array 'ACEfit_Par' for parallelization
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if ( ~isfield(ACEfit_Par,'nPerm') || isempty(ACEfit_Par.nPerm) )
     ACEfit_Par.nPerm = 1000;

apace/ProcData.m

@@ -2,6 +2,9 @@
 %
 % Process data for further computation
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 nElm = size(Y,1);
 

apace/Reorder.m

@@ -14,6 +14,9 @@
 %  2    - DZ twins
 %  3    - Siblings
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 %
 % Fill-in defaults

apace/WK_ParallelOutline.m

@@ -1,6 +1,9 @@
 %
 % Preparation
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 % % Uncomment this to hide figures (for the rest of your Matlab session!).
 % % This is useful if you don't want to see the large number of figure

apace/WriteData.m

@@ -2,6 +2,9 @@ function WriteData(X,Vs,fname,fpath)
 %
 %  Write data, based on template image
 %
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if length(Vs.Dim)==1
     Dim = [Vs.Dim 1];

apace/abline.m

@@ -12,7 +12,9 @@
 % Like Splus' abline.  Line is plotted and then moved behind all other
 % points on the graph.
 %
-% $Id: abline.m,v 1.1 2013/06/04 10:38:11 nichols Exp $
+%_______________________________________________________________________
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if (nargin==2) & isstr(a)
   a = lower(a);

apace/clone_vol.m

@@ -5,7 +5,8 @@
 % Clones a volume, while discarding any information we don't want to
 % clone.
 %_______________________________________________________________________
-% $Id$
+% Version: http://github.com/nicholst/APACE/tree/$Format:%h$
+%          $Format:%ci$
 
 if iscell(Vtemplate)
     V = Vtemplate{1};