Scripts for BIC-NIST registration paper

• minc-toolkit-v2, version 1.9.15 was used for running all minc-related experiments
• All experiments have been run on McGill HPC cluster
• BestLinReg, MRITOTAL, and Elastix have been run using ipl_preprocess_pipeline.py All preprocessing and segmentation options of the pipeline have been set to null (see the .json files), therefore only the specified registrations are executed.
• Revised BestLinReg was run using standalone script 'bestlinreg_claude'
• ANTs was run using modified script from ANTs distribution: https://github.com/ANTsX/ANTs/blob/master/Scripts/newAntsExample.sh
• All experiments used ICBM 2009a Nonlinear Symmetric template for registration target
• The neuroimage paper is at https://pubmed.ncbi.nlm.nih.gov/29548850/ by Dr. Dadar - "A comparison of publicly available linear MRI stereotaxic registration techniques", Neuroimage 2018 Jul 1;174:191-200.