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Sync with ESCOMP/CDEPS (2024-10-07) #66

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Commits on Dec 19, 2022

  1. introduce simple data mode as an constant configurable forcing.

    in this initial commit, it is just a copy of CORE2-NYF.
    alperaltuntas committed Dec 19, 2022
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Commits on Dec 21, 2022

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Commits on Dec 23, 2022

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Commits on Apr 26, 2023

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Commits on Apr 28, 2023

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  2. Merge tag 'cdeps1.0.10' into cplhistStreams

    cdeps1.0.10
    olyson committed Apr 28, 2023
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Commits on May 8, 2023

  1. Remove tabs fixing ESCOMP#231

    ekluzek committed May 8, 2023
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Commits on May 9, 2023

  1. Merge pull request ESCOMP#232 from ekluzek/removetabsindatmbuildnml

    Remove the tabs in the datm buildnml
    jedwards4b authored May 9, 2023
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  3. Merge pull request ESCOMP#228 from olyson/cplhistStreams

    Update stream definitions for new coupler history file format
    
    ### Description of changes
    
    Modify stream_definition_datm.xml to generate a streams file (datm.streams.xml) with the new coupler history file format.
    
    ### Specific notes
    
    Changes to accommodate new coupler history file names.
    Change offset for solar stream from 2700 to -900 to accommodate changes due to time stamps.
    These changes work in conjunction with CDEPS PR ESCOMP#224 and CDEPS PR ESCOMP#222 .
    Note that I did not change the file names for ndep, or remove that stream. See ESCOMP#230
    
    Contributors other than yourself, if any: @billsacks 
    
    CDEPS Issues Fixed (include github issue #):  N/A
    
    Are there dependencies on other component PRs (if so list):  No
    
    Are changes expected to change answers (bfb, different to roundoff, more substantial):  Yes, in coupler history mode.
    
    Any User Interface Changes (namelist or namelist defaults changes): No
    
    Testing performed (e.g. aux_cdeps, CESM prealpha, etc):  I have conducted a pair of cases, an F-case to generate coupler history files, and an I-case to read those files, using the new file name convention, and compared the forcing output variables from clm history files between the two cases.  @billsacks and I reviewed these differences and found them to be acceptable.
    
    @billsacks ran SMS_D_Ld1.ne30pg3_t061.I1850Clm50BgcSpinup.cheyenne_intel.clm-cplhist in the context of ESCOMP/CTSM#1999
    
    Hashes used for testing:  N/A
    billsacks authored May 9, 2023
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Commits on May 16, 2023

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Commits on May 17, 2023

  1. Merge pull request ESCOMP#233 from jedwards4b/black_format_python

    black reformat these python files
    jedwards4b authored May 17, 2023
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Commits on May 19, 2023

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  2. debug action

    jedwards4b committed May 19, 2023
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  3. try again

    jedwards4b committed May 19, 2023
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  4. fix run statement format

    jedwards4b committed May 19, 2023
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  6. Merge pull request ESCOMP#234 from jedwards4b/update_actions

    update github to make cdeps ext build an action
    jedwards4b authored May 19, 2023
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Commits on Jun 5, 2023

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  2. Merge pull request ESCOMP#235 from fvitt/sst_files_update

    Update SST files for historical configurations
    jedwards4b authored Jun 5, 2023
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Commits on Jun 27, 2023

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Commits on Jul 3, 2023

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Commits on Jul 4, 2023

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Commits on Jul 10, 2023

  1. Merge pull request ESCOMP#236 from klindsay28/docs_link_in_readme

    correct docs link in README.md
    jedwards4b authored Jul 10, 2023
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  3. Merge pull request ESCOMP#237 from uturuncoglu/feature/esmx

    Enable build with ESMX and introduce export_all
    uturuncoglu authored Jul 10, 2023
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Commits on Jul 13, 2023

  1. fix for docn

    uturuncoglu committed Jul 13, 2023
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  2. Merge pull request ESCOMP#238 from uturuncoglu/hotfix/export_all

    Fix export_all for data ocean
    jedwards4b authored Jul 13, 2023
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Commits on Aug 16, 2023

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  5. add pnetcdf-config

    jedwards4b committed Aug 16, 2023
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  7. response to review

    jedwards4b committed Aug 16, 2023
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  8. response to review

    jedwards4b committed Aug 16, 2023
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Commits on Aug 17, 2023

  1. Merge pull request ESCOMP#239 from jedwards4b/github_esmf_bld_update

    update esmf bld to use official esmf action
    jedwards4b authored Aug 17, 2023
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Commits on Aug 21, 2023

  1. simple fix

    adrifoster committed Aug 21, 2023
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  2. Merge branch 'main' into buildlib_fix

    adrifoster committed Aug 21, 2023
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  3. make a little nicer

    adrifoster committed Aug 21, 2023
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  4. put back...

    adrifoster committed Aug 21, 2023
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  5. Merge pull request ESCOMP#241 from adrifoster/buildlib_fix

    Simple fix for buildlib python bug
    
    ### Description of changes
    
    As laid out in ESCOMP#240 a bug was found in the [buildlib script](https://github.com/ESCOMP/CDEPS/blob/f7e657e6f0ad2e758534b0e2cd195f18e8f08ecc/cime_config/buildlib#L182)
    
    This code update changes the `append` line to a string concatenation and updates the `if "F90" in line and not "fox" in line:` line to ensure different capitalizations of "fox" don't slip through.
    
    
    Contributors other than yourself, if any: @billsacks 
    
    CDEPS Issues Fixed (include github issue #): ESCOMP#240
    
    Are there dependencies on other component PRs (if so list): No
    
    Are changes expected to change answers (bfb, different to roundoff, more substantial): No
    
    Any User Interface Changes (namelist or namelist defaults changes): No
    
    Testing performed (e.g. aux_cdeps, CESM prealpha, etc):
    
    Tested manually with `SMS_D_Ld1_P8x1.f10_f10_mg37.I2000Clm50BgcCropQianRs.fleabone_gnu.clm-default` (on personal computer)
    
    Hashes used for testing:
    `cdeps1.0.13-1-gd31de60`
    billsacks authored Aug 21, 2023
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Commits on Oct 4, 2023

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Commits on Oct 8, 2023

  1. in simple (idealized) data mode, replace giss radiation with an ideal…

    …ized forcing controlled via nml params
    alperaltuntas committed Oct 8, 2023
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Commits on Oct 9, 2023

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  2. Merge pull request ESCOMP#198 from alperaltuntas/merge_simple_forcing

    Simple DATM forcing mode
    jedwards4b authored Oct 9, 2023
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Commits on Oct 17, 2023

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Commits on Oct 20, 2023

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  3. Merge pull request ESCOMP#250 from jedwards4b/add_nl_lookup_tool

    add namelist lookup to each namelist read call
    jedwards4b authored Oct 20, 2023
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Commits on Oct 24, 2023

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  2. Merge pull request ESCOMP#251 from alperaltuntas/fix_modifier_typo

    fix minor typo in drof modifier mode
    jedwards4b authored Oct 24, 2023
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Commits on Oct 27, 2023

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  2. Merge pull request ESCOMP#253 from jedwards4b/allow_path_changes

    allow path changes and symlinks in stream filenames
    jedwards4b authored Oct 27, 2023
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Commits on Dec 13, 2023

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Commits on Jan 5, 2024

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Commits on Jan 10, 2024

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Commits on Jan 26, 2024

  1. Merge pull request ESCOMP#259 from uturuncoglu/feature/mask_only

    Bring support for configurable source and destination mask
    jedwards4b authored Jan 26, 2024
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  3. Merge pull request ESCOMP#256 from jedwards4b/sst_Had_update

    update default SSTICE_DATA_FILENAME to match that previously used in cam
    jedwards4b authored Jan 26, 2024
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Commits on Feb 27, 2024

  1. Merge pull request #1 from mvertens/feature/pass_10mwind_to_ww3

    new passing of 10m wind explicitly to ww3 -
    mvertens authored Feb 27, 2024
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Commits on Mar 8, 2024

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  2. namelist def datm update

    TeaganKing committed Mar 8, 2024
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Commits on Mar 9, 2024

  1. Merge tag 'cdeps1.0.28' into noresm

    cdeps1.0.28
    mvertens committed Mar 9, 2024
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Commits on Mar 18, 2024

  1. first draft implementation of multiple ice sheets in the dglc code - …

    …namelist still needs to be implemented
    mvertens committed Mar 18, 2024
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Commits on Mar 19, 2024

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Commits on Mar 20, 2024

  1. more compilation fixes

    mvertens committed Mar 20, 2024
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  2. more compilation fixes

    mvertens committed Mar 20, 2024
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  5. now in run phase

    mvertens committed Mar 20, 2024
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Commits on Mar 21, 2024

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Commits on Mar 22, 2024

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Commits on Mar 24, 2024

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Commits on Mar 27, 2024

  1. more changes to get dglc working with CLM

    Mariana Vertenstein committed Mar 27, 2024
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  2. first addition of documentation for dglc

    Mariana Vertenstein committed Mar 27, 2024
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  3. udpates for documentation for dglc

    mvertens committed Mar 27, 2024
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  4. more additions for dglc

    mvertens committed Mar 27, 2024
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Commits on Mar 28, 2024

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  2. Merge pull request ESCOMP#267 from jedwards4b/update_testlist_for_der…

    …echo
    
    update the testlist to work on derecho
    jedwards4b authored Mar 28, 2024
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  3. update the testlist to work on derecho

    jedwards4b authored and Mariana Vertenstein committed Mar 28, 2024
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  4. Merge branch 'main' into feature/add_dglc

    Mariana Vertenstein committed Mar 28, 2024
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  5. added new derecho tests across the system including in dglc

    Mariana Vertenstein committed Mar 28, 2024
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  6. removed cdeps/cime_config/testdefs - tests are already defined in cde…

    …ps/dxxx/cime_config/testdefs
    Mariana Vertenstein committed Mar 28, 2024
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Commits on Mar 29, 2024

  1. fixed regression testing failures and also added aux_cdeps_noresm tes…

    …t category
    Mariana Vertenstein committed Mar 29, 2024
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  2. removed unused variable declaration

    Mariana Vertenstein committed Mar 29, 2024
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  3. need CESMCOUPLED cpp here

    jedwards4b committed Mar 29, 2024
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  4. clean up

    jedwards4b committed Mar 29, 2024
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  5. fixed indentation

    Mariana Vertenstein committed Mar 29, 2024
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Commits on Mar 30, 2024

  1. Increase stream filename length to CX (512) from CL (256) (ESCOMP#265)

    * Increase stream filename length to CX (512) from CL (256)
    
    * Move testlist from cheyenne to derecho resolving ESCOMP#265
    
    * Change more references of Cheyenne to Derecho in test lists and in datm document
    
    * Remove _Vnuopc in testlists since NUOPC is the default and this is unneeded
    ekluzek authored Mar 30, 2024
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  3. updates for dglc features required

    Mariana Vertenstein committed Mar 30, 2024
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  4. Merge branch 'main' into feature/add_dglc

    Mariana Vertenstein committed Mar 30, 2024
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  5. updated documentation

    Mariana Vertenstein committed Mar 30, 2024
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Commits on Apr 1, 2024

  1. Merge pull request ESCOMP#268 from mvertens/feature/add_dglc

    Add a dglc component with noevolve mode
    jedwards4b authored Apr 1, 2024
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Commits on Apr 2, 2024

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Commits on Apr 10, 2024

  1. Merge pull request ESCOMP#271 from jedwards4b/enhancement/shorter_tes…

    …t_data_list
    
    make the amount of data required to download minimal for testing
    jedwards4b authored Apr 10, 2024
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Commits on Apr 17, 2024

  1. add Fogg_rofi to dglc

    Mariana Vertenstein committed Apr 17, 2024
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  2. update to have antarctica work with clm

    Mariana Vertenstein committed Apr 17, 2024
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Commits on Apr 19, 2024

  1. added ability to read in multi-level docn data

    Mariana Vertenstein committed Apr 19, 2024
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  2. added new multilevel mode to docn

    Mariana Vertenstein committed Apr 19, 2024
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Commits on Apr 23, 2024

  1. changes to get multilevel ocean input read

    Mariana Vertenstein committed Apr 23, 2024
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  2. added query for units of ocean depth layers

    Mariana Vertenstein committed Apr 23, 2024
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Commits on Apr 24, 2024

  1. updates needed for multi-level ocean input

    Mariana Vertenstein committed Apr 24, 2024
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  2. update comment

    Mariana Vertenstein committed Apr 24, 2024
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  3. Merge branch 'main' into feature/update_docn

    Mariana Vertenstein committed Apr 24, 2024
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Commits on Apr 28, 2024

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  2. Merge pull request ESCOMP#275 from ESCOMP/revert-271-enhancement/shor…

    …ter_test_data_list
    
    Revert "make the amount of data required to download minimal for testing"
    jedwards4b authored Apr 28, 2024
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Commits on Apr 29, 2024

  1. Merge tag 'cdeps1.0.33' into feature/update_docn

    cdeps1.0.33
    Mariana Vertenstein committed Apr 29, 2024
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  2. fixes to permit stream field with ungridded dimensions

    Mariana Vertenstein committed Apr 29, 2024
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  3. updated testlist so that DGLC%NOEVOLVE passes

    Mariana Vertenstein committed Apr 29, 2024
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Commits on May 1, 2024

  1. fixes for vertical interpolation

    Mariana Vertenstein committed May 1, 2024
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Commits on May 2, 2024

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Commits on May 5, 2024

  1. fix for CTSM issue Issue #2518

    Mariana Vertenstein committed May 5, 2024
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Commits on May 8, 2024

  1. updates to PLUMBER stream

    TeaganKing committed May 8, 2024
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Commits on May 9, 2024

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Commits on May 13, 2024

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  2. update github workflow

    jedwards4b committed May 13, 2024
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  3. fix typo in .gitmodules

    jedwards4b committed May 13, 2024
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  4. Merge pull request ESCOMP#281 from jedwards4b/rme/cdeps1.0.33

    Rme/cdeps1.0.33
    Bypassing review for expediency.
    jedwards4b authored May 13, 2024
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Commits on May 14, 2024

  1. update workflow versions

    jedwards4b committed May 14, 2024
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  3. comment out unused vars

    jedwards4b committed May 14, 2024
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  4. remove more unused vars

    jedwards4b committed May 14, 2024
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  6. Merge pull request ESCOMP#280 from ESCOMP/feature/update_docn

    add new multilevel ocean stream input
    jedwards4b authored May 14, 2024
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Commits on May 15, 2024

  1. bug fix for single level

    Mariana Vertenstein committed May 15, 2024
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  2. Merge pull request ESCOMP#282 from mvertens/feature/bugfix

    bug fix for single level log output
    jedwards4b authored May 15, 2024
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Commits on May 16, 2024

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Commits on May 17, 2024

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Commits on May 22, 2024

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Commits on May 31, 2024

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Commits on Jun 14, 2024

  1. fix initialization of dglc import/export pointers

    Mariana Vertenstein committed Jun 14, 2024
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  3. Merge pull request ESCOMP#287 from fischer-ncar/nag-fix

    Fix missing field width for L edit descriptor for NAG
    fischer-ncar authored Jun 14, 2024
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Commits on Jun 24, 2024

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  2. Merge pull request ESCOMP#277 from TeaganKing/default_files

    Update stream_definition_datm.xml to include longer time period in files
    
    ### Description of changes
    This PR includes files containing longer time periods (1849-2101) in `datm/cime_config/stream_definition_datm.xml` for the following SSP370 streams: `co2tseries.SSP3-7.0` and `presaero.SSP3-7.0`
    
    ### Contributors other than yourself, if any: @wwieder , @ekluzek , @samsrabin 
    
    CDEPS Issues Fixed: ESCOMP#246
    
    
    Are there dependencies on other component PRs (if so list): No
    
    Are changes expected to change answers: No, the files are just extended but contain the same data for the later part of the time period
    
    Any User Interface Changes (namelist or namelist defaults changes): No
    
    Testing performed (e.g. aux_cdeps, CESM prealpha, etc):
    
    Hashes used for testing:
    billsacks authored Jun 24, 2024
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Commits on Jun 26, 2024

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  2. Merge pull request ESCOMP#278 from mvertens/feature/fix_mpas_input

    allow input of stream on unstructured mesh (e.g. mpas)
    jedwards4b authored Jun 26, 2024
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  6. Merge pull request ESCOMP#283 from jedwards4b/update_fox_bld

    updates the fox build since the directory now always exists
    jedwards4b authored Jun 26, 2024
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  9. Merge pull request ESCOMP#285 from dabail10/somwav

    Add changes to exchange between SOM and WW3DEV
    jedwards4b authored Jun 26, 2024
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  11. Merge pull request ESCOMP#286 from mvertens/feature/init_dglc_pointers

    fix initialization of dglc import/export pointers
    jedwards4b authored Jun 26, 2024
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Commits on Jun 28, 2024

  1. renamed Fogg_rofi to Fgrg_rofi

    Mariana Vertenstein committed Jun 28, 2024
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  2. Merge branch 'main' into feature/rename_fogg_rofi

    Mariana Vertenstein committed Jun 28, 2024
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  3. merge to main

    Mariana Vertenstein committed Jun 28, 2024
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  4. Merge pull request ESCOMP#288 from mvertens/feature/rename_fogg_rofi

    rename Fogg rofi to Fgrg_rofi
    jedwards4b authored Jun 28, 2024
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Commits on Jul 12, 2024

  1. Add capability to send both prescribed SST and multi-level ocean SST/…

    …SALN to mediator (ESCOMP#289)
    
    * new data ocn mode to send both multi-level ocn and sst to mediator
    * moved cheyenne to derecho in testlist
    * added new mode code
    Co-authored-by: Mariana Vertenstein <[email protected]>
    mvertens authored Jul 12, 2024
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Commits on Jul 30, 2024

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Commits on Aug 1, 2024

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  5. Update buildnml to use caseroot to get plumber2 information because p…

    …lumber2site var not recognized at time of buildnml
    TeaganKing authored Aug 1, 2024
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Commits on Aug 2, 2024

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Commits on Aug 8, 2024

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Commits on Aug 9, 2024

  1. Merge pull request ESCOMP#291 from jedwards4b/fix/cdeps_build_concurancy

    Fix/cdeps build concurancy
    jedwards4b authored Aug 9, 2024
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Commits on Aug 11, 2024

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Commits on Aug 13, 2024

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Commits on Aug 16, 2024

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  6. Merge pull request ESCOMP#262 from TeaganKing/plumber

    Plumber updates
    
    This addresses ESCOMP#248 In order to implement PLUMBER capabilities
    billsacks authored Aug 16, 2024
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Commits on Aug 20, 2024

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Commits on Aug 21, 2024

  1. remove commented code

    jedwards4b committed Aug 21, 2024
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  2. Merge pull request ESCOMP#297 from jedwards4b/fox_download_revert

    Fox download revert
    jedwards4b authored Aug 21, 2024
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  4. remove unused function

    jedwards4b committed Aug 21, 2024
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Commits on Aug 22, 2024

  1. Merge pull request ESCOMP#298 from jedwards4b/add/nuopc_shr_methods.F90

    add nuopc_shr_methods.F90 for UFS
    jedwards4b authored Aug 22, 2024
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Commits on Aug 29, 2024

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Commits on Aug 30, 2024

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  2. Third step complete, added global sums to spread calculation out over…

    … the entire ice sheet
    Katetc committed Aug 30, 2024
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Commits on Sep 2, 2024

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Commits on Sep 3, 2024

  1. fixed problems in github CI

    mvertens committed Sep 3, 2024
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  3. Merge pull request ESCOMP#306 from mvertens/feature/add_restart_for_dglc

    add restart  read/write for dglc%noevolve
    jedwards4b authored Sep 3, 2024
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  4. Removed second area weighting and second if clause to make sure the 0…

    …-0 case is handled correctly
    Katetc committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. fix issues in refactor

    jedwards4b committed Sep 4, 2024
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  2. fix varid in write

    jedwards4b committed Sep 4, 2024
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  3. reorder iodesc destroy

    jedwards4b committed Sep 4, 2024
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  4. Merge pull request ESCOMP#307 from jedwards4b/dglc_fix_for_multiple_i…

    …cesheets
    
    fix issues in refactor
    jedwards4b authored Sep 4, 2024
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Commits on Sep 5, 2024

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Commits on Sep 6, 2024

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  2. Merge pull request ESCOMP#309 from jedwards4b/update_cdeps_testslists

    update aux_cdeps tests for cesm3
    jedwards4b authored Sep 6, 2024
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  4. Merge pull request ESCOMP#303 from Katetc/katetc/dglc_negfluxes

    Katetc/dglc negfluxes
    jedwards4b authored Sep 6, 2024
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Commits on Oct 7, 2024

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Commits on Oct 8, 2024

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