Merge branch 'develop' into feature/use_jcb_atm

* develop:
  Visualize stats in simple html document (#1089)
  Time series of csv stats (#1086)
  Use the gdas bkg for the static B (#1084)
  Add module files to compile on AWS (#1082)
  The DA only uses the gdas bkg ... fixing again ... (#1079)
  Using ioda util to convert the datetime in AMSR2 converter (#1077)
  Add modulefile for Dogwood/Cactus (#1073)
  Addition of a switch for the cycling type (#1072)
  Added YAML, JSON, python files for assimilating VIIRS satwinds (#1055)
  No mpi for the ascii stats (#1070)

build.sh

@@ -71,7 +71,7 @@ while getopts "p:t:c:hvdfa" opt; do
 done
 
 case ${BUILD_TARGET} in
-  hera | orion | hercules)
+  hera | orion | hercules | wcoss2 | noaacloud)
     echo "Building GDASApp on $BUILD_TARGET"
     source $dir_root/ush/module-setup.sh
     module use $dir_root/modulefiles

modulefiles/GDAS/noaacloud.intel.lua

@@ -0,0 +1,93 @@
+help([[
+Load environment for running the GDAS application with Intel compilers and MPI.
+]])
+
+local pkgName    = myModuleName()
+local pkgVersion = myModuleVersion()
+local pkgNameVer = myModuleFullName()
+
+prepend_path("MODULEPATH", "/contrib/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
+
+-- below two lines get us access to the spack-stack modules
+load("stack-intel/2021.3.0")
+load("stack-intel-oneapi-mpi/2021.3.0")
+load("cmake/3.23.1")
+load("gettext/0.19.8.1")
+--load("libunistring/1.1")
+--load("libidn2/2.3.4")
+load("pcre2/10.42")
+load("curl/8.4.0")
+load("zlib/1.2.13")
+load("git/1.8.3.1")
+load("pkg-config/0.27.1")
+load("hdf5/1.14.0")
+load("parallel-netcdf/1.12.2")
+load("netcdf-c/4.9.2")
+load("nccmp/1.9.0.1")
+load("netcdf-fortran/4.6.1")
+load("nco/5.0.6")
+load("parallelio/2.5.10")
+load("wget/1.14")
+load("boost/1.83.0")
+load("bufr/12.0.1")
+load("git-lfs/2.4.1")
+load("ecbuild/3.7.2")
+load("openjpeg/2.3.1")
+load("eccodes/2.32.0")
+load("eigen/3.4.0")
+load("openblas/0.3.24")
+load("eckit/1.24.5")
+load("fftw/3.3.10")
+load("fckit/0.11.0")
+load("fiat/1.2.0")
+load("ectrans/1.2.0")
+load("atlas/0.35.1")
+load("sp/2.5.0")
+load("gsl-lite/0.37.0")
+load("libjpeg/2.1.0")
+load("krb5/1.15.1")
+load("libtirpc/1.3.3")
+load("hdf/4.2.15")
+load("jedi-cmake/1.4.0")
+load("libpng/1.6.37")
+load("libxt/1.1.5")
+load("libxmu/1.1.4")
+load("libxpm/3.5.12")
+load("libxaw/1.0.13")
+load("udunits/2.2.28")
+load("ncview/2.1.9")
+load("netcdf-cxx4/4.3.1")
+load("json/3.10.5")
+load("crtm/2.4.0.1")
+load("rocoto/1.3.3")
+load("prod_util/2.1.1")
+
+load("py-jinja2/3.0.3")
+load("py-netcdf4/1.5.8")
+load("py-pybind11/2.11.0")
+load("py-pycodestyle/2.11.0")
+load("py-pyyaml/6.0")
+load("py-scipy/1.11.3")
+load("py-xarray/2023.7.0")
+load("py-f90nml/1.4.3")
+load("py-pip/23.1.2")
+
+-- hack for wxflow
+--prepend_path("PYTHONPATH", "/contrib/Wei.Huang/data/glopara/data/gdasapp-wxflow-20240307/src/wxflow")
+
+setenv("CC","mpiicc")
+setenv("FC","mpiifort")
+setenv("CXX","mpiicpc")
+
+local mpiexec = '/apps/slurm/default/bin/srun'
+local mpinproc = '-n'
+setenv('MPIEXEC_EXEC', mpiexec)
+setenv('MPIEXEC_NPROC', mpinproc)
+
+setenv("CRTM_FIX","/contrib/Wei.Huang/data/hack-orion/crtm/2.4.0_skylab_3.0")
+setenv("GDASAPP_TESTDATA","/contrib/Wei.Huang/data/hack-orion/data")
+
+whatis("Name: ".. pkgName)
+whatis("Version: ".. pkgVersion)
+whatis("Category: GDASApp")
+whatis("Description: Load all libraries needed for GDASApp")

modulefiles/GDAS/wcoss2.intel.lua

@@ -0,0 +1,51 @@
+help([[
+Load environment for running the GDAS application with Intel compilers and MPI.
+]])
+
+local pkgName    = myModuleName()
+local pkgVersion = myModuleVersion()
+local pkgNameVer = myModuleFullName()
+
+prepend_path("MODULEPATH", "/apps/dev/lmodules/core")
+
+load("PrgEnv-intel/8.2.0")
+load("cmake/3.20.2")
+load("craype")
+load("cray-pals")
+load("git/2.29.0")
+load("intel/19.1.3.304")
+load("cray-mpich/8.1.12")
+load("hdf5/1.12.2")
+load("netcdf/4.7.4")
+load("udunits/2.2.28")
+load("eigen/3.4.0")
+load("boost/1.79.0")
+load("gsl-lite/v0.40.0")
+load("sp/2.4.0")
+load("python/3.8.6")
+load("ecbuild/3.7.0")
+load("qhull/2020.2")
+load("eckit/1.24.4")
+load("fckit/0.11.0")
+load("atlas/0.35.0")
+load("nccmp")
+
+-- hack for pybind11
+setenv("pybind11_ROOT", "/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/lib/python3.8/site-packages/pybind11/share/cmake/pybind11")
+
+-- hack for wxflow
+--prepend_path("PYTHONPATH", "/scratch1/NCEPDEV/da/python/gdasapp/wxflow/20240307/src")
+
+local mpiexec = '/pe/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpirun'
+local mpinproc = '-n'
+setenv('MPIEXEC_EXEC', mpiexec)
+setenv('MPIEXEC_NPROC', mpinproc)
+
+setenv("CRTM_FIX","/lfs/h2/emc/da/noscrub/emc.da/GDASApp/fix/crtm/2.4.0")
+setenv("GDASAPP_TESTDATA","/lfs/h2/emc/da/noscrub/emc.da/GDASApp/data")
+setenv("GDASAPP_UNIT_TEST_DATA_PATH", "/lfs/h2/emc/da/noscrub/emc.da/GDASApp/data/test")
+
+whatis("Name: ".. pkgName)
+whatis("Version: ".. pkgVersion)
+whatis("Category: GDASApp")
+whatis("Description: Load all libraries needed for GDASApp")