Yamls for MIRS type sea-ice obs in cycling test (#1257)

#### This PR is to add the yaml key for cycling test - Yaml keys for MIRS_NPP Ioda Converters - Generate `gdas.t06z.icec_mirs.2021063006.nc4` for the cycling test #### Result looks like below ![GFSv17-3DVAR-C384mx025_gdasprepoceanobs_202106300600](https://github.com/user-attachments/assets/01a6ede8-eb09-448e-a493-6f2f8ef4f62b) --------- Co-authored-by: Guillaume Vernieres <[email protected]>
NOAA-EMC · Sep 24, 2024 · 7523c48 · 7523c48
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diff --git a/parm/soca/obs/config/icec_amsu_mb_l2.yaml b/parm/soca/obs/config/icec_amsu_mb_l2.yaml
@@ -0,0 +1,45 @@
+obs space:
+  name: icec_amsu_mb_l2
+  obsdatain:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_amsu_mb_l2.${PDY}${cyc}.nc4
+  obsdataout:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/diags/icec_amsu_mb_l2.${PDY}${cyc}.nc4
+  simulated variables: [seaIceFraction]
+  io pool:
+    max pool size: 1
+get values:
+  time interpolation: linear
+obs operator:
+  name: Identity
+  observation alias file: obsop_name_map.yaml
+obs error:
+  covariance model: diagonal
+obs filters:
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/sea_area_fraction}
+    minvalue: 0.9
+- filter: Bounds Check
+  minvalue: 0.0
+  maxvalue: 1.0
+#- filter: Background Check
+#  threshold: 5.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 2.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 0.0
+  action:
+    name: inflate error
+    inflation factor: 2.0
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/distance_from_coast}
+    minvalue: 100e3
diff --git a/parm/soca/obs/config/icec_atms_n20_l2.yaml b/parm/soca/obs/config/icec_atms_n20_l2.yaml
@@ -0,0 +1,45 @@
+obs space:
+  name: icec_atms_n20_l2
+  obsdatain:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_n20_l2.{PDY}${cyc}.nc4
+  obsdataout:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/diags/icec_atms_n20_l2.${PDY}${cyc}.nc4
+  simulated variables: [seaIceFraction]
+  io pool:
+    max pool size: 1
+get values:
+  time interpolation: linear
+obs operator:
+  name: Identity
+  observation alias file: obsop_name_map.yaml
+obs error:
+  covariance model: diagonal
+obs filters:
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/sea_area_fraction}
+    minvalue: 0.9
+- filter: Bounds Check
+  minvalue: 0.0
+  maxvalue: 1.0
+#- filter: Background Check
+#  threshold: 5.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 2.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 0.0
+  action:
+    name: inflate error
+    inflation factor: 2.0
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/distance_from_coast}
+    minvalue: 100e3
diff --git a/parm/soca/obs/config/icec_atms_n21_l2.yaml b/parm/soca/obs/config/icec_atms_n21_l2.yaml
@@ -0,0 +1,45 @@
+obs space:
+  name: icec_atms_n21_l2
+  obsdatain:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_n21_l2.{PDY}${cyc}.nc4
+  obsdataout:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/diags/icec_atms_n21_l2.${PDY}${cyc}.nc4
+  simulated variables: [seaIceFraction]
+  io pool:
+    max pool size: 1
+get values:
+  time interpolation: linear
+obs operator:
+  name: Identity
+  observation alias file: obsop_name_map.yaml
+obs error:
+  covariance model: diagonal
+obs filters:
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/sea_area_fraction}
+    minvalue: 0.9
+- filter: Bounds Check
+  minvalue: 0.0
+  maxvalue: 1.0
+#- filter: Background Check
+#  threshold: 5.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 2.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 0.0
+  action:
+    name: inflate error
+    inflation factor: 2.0
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/distance_from_coast}
+    minvalue: 100e3
diff --git a/parm/soca/obs/config/icec_atms_npp_l2.yaml b/parm/soca/obs/config/icec_atms_npp_l2.yaml
@@ -0,0 +1,45 @@
+obs space:
+  name: icec_atms_npp_l2
+  obsdatain:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_npp_l2.{PDY}${cyc}.nc4
+  obsdataout:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/diags/icec_atms_npp_l2.${PDY}${cyc}.nc4
+  simulated variables: [seaIceFraction]
+  io pool:
+    max pool size: 1
+get values:
+  time interpolation: linear
+obs operator:
+  name: Identity
+  observation alias file: obsop_name_map.yaml
+obs error:
+  covariance model: diagonal
+obs filters:
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/sea_area_fraction}
+    minvalue: 0.9
+- filter: Bounds Check
+  minvalue: 0.0
+  maxvalue: 1.0
+#- filter: Background Check
+#  threshold: 5.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 2.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 0.0
+  action:
+    name: inflate error
+    inflation factor: 2.0
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/distance_from_coast}
+    minvalue: 100e3
diff --git a/parm/soca/obs/config/icec_gmi_gpm_l2.yaml b/parm/soca/obs/config/icec_gmi_gpm_l2.yaml
@@ -0,0 +1,45 @@
+obs space:
+  name: icec_gmi_gpm_l2
+  obsdatain:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_gmi_gpm_l2.${PDY}${cyc}.nc4
+  obsdataout:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/diags/icec_gmi_gpm_l2.${PDY}${cyc}.nc4
+  simulated variables: [seaIceFraction]
+  io pool:
+    max pool size: 1
+get values:
+  time interpolation: linear
+obs operator:
+  name: Identity
+  observation alias file: obsop_name_map.yaml
+obs error:
+  covariance model: diagonal
+obs filters:
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/sea_area_fraction}
+    minvalue: 0.9
+- filter: Bounds Check
+  minvalue: 0.0
+  maxvalue: 1.0
+#- filter: Background Check
+#  threshold: 5.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 2.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 0.0
+  action:
+    name: inflate error
+    inflation factor: 2.0
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/distance_from_coast}
+    minvalue: 100e3
diff --git a/parm/soca/obs/config/icec_ssmis_f17_l2.yaml b/parm/soca/obs/config/icec_ssmis_f17_l2.yaml
@@ -0,0 +1,45 @@
+obs space:
+  name: icec_ssmis_f17_l2
+  obsdatain:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_ssmis_f17_l2.${PDY}${cyc}.nc4
+  obsdataout:
+    engine:
+      type: H5File
+      obsfile: !ENV ${DATA}/diags/icec_ssmis_f17_l2.${PDY}${cyc}.nc4
+  simulated variables: [seaIceFraction]
+  io pool:
+    max pool size: 1
+get values:
+  time interpolation: linear
+obs operator:
+  name: Identity
+  observation alias file: obsop_name_map.yaml
+obs error:
+  covariance model: diagonal
+obs filters:
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/sea_area_fraction}
+    minvalue: 0.9
+- filter: Bounds Check
+  minvalue: 0.0
+  maxvalue: 1.0
+#- filter: Background Check
+#  threshold: 5.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 2.0
+- filter: Domain Check
+  where:
+  - variable: { name: GeoVaLs/sea_surface_temperature}
+    maxvalue: 0.0
+  action:
+    name: inflate error
+    inflation factor: 2.0
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/distance_from_coast}
+    minvalue: 100e3
diff --git a/parm/soca/obs/obs_list.yaml b/parm/soca/obs/obs_list.yaml
@@ -15,6 +15,12 @@ observers:
 # Ice concentration
 - !INC ${MARINE_OBS_YAML_DIR}/icec_amsr2_north.yaml
 - !INC ${MARINE_OBS_YAML_DIR}/icec_amsr2_south.yaml
+#- !INC ${MARINE_OBS_YAML_DIR}/icec_amsu_mb_l2.yaml
+#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_n20_l2.yaml
+#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_n21_l2.yaml
+#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_npp_l2.yaml
+#- !INC ${MARINE_OBS_YAML_DIR}/icec_gmi_gpm_l2.yaml
+#- !INC ${MARINE_OBS_YAML_DIR}/icec_ssmis_f17_l2.yaml
 
 # in situ: monthly
 #- !INC ${MARINE_OBS_YAML_DIR}/insitu_profile_bathy.yaml

diff --git a/parm/soca/obsprep/obsprep_config.yaml b/parm/soca/obsprep/obsprep_config.yaml
@@ -46,6 +46,54 @@ observations:
     dmpdir regex: 'AMSR2-SEAICE-SH_v2r2_GW1_s*.nc'
     ocean basin: RECCAP2_region_masks_all_v20221025.nc
 
+- obs space:
+    name: icec_amsu_mb_l2
+    provider: MIRS
+    dmpdir subdir: ocean/icec
+    type: nc
+    dmpdir regex: 'NPR-MIRS-IMG_v11r9_ma1_s*.nc'
+    ocean basin: RECCAP2_region_masks_all_v20221025.nc
+
+- obs space:
+    name: icec_atms_n20_l2
+    provider: MIRS
+    dmpdir subdir: ocean/icec
+    type: nc
+    dmpdir regex: 'NPR-MIRS-IMG_v11r9_n20_s*.nc'
+    ocean basin: RECCAP2_region_masks_all_v20221025.nc
+
+- obs space:
+    name: icec_atms_n21_l2
+    provider: MIRS
+    dmpdir subdir: ocean/icec
+    type: nc
+    dmpdir regex: 'NPR-MIRS-IMG_v11r9_n21_s*.nc'
+    ocean basin: RECCAP2_region_masks_all_v20221025.nc
+
+- obs space:
+    name: icec_atms_npp_l2
+    provider: MIRS
+    dmpdir subdir: ocean/icec
+    type: nc
+    dmpdir regex: 'NPR-MIRS-IMG_v11r4_npp_s*.nc'
+    ocean basin: RECCAP2_region_masks_all_v20221025.nc
+
+- obs space:
+    name: icec_gmi_gpm_l2
+    provider: MIRS
+    dmpdir subdir: ocean/icec
+    type: nc
+    dmpdir regex: 'NPR-MIRS-IMG_v11r9_gpm_s*.nc'
+    ocean basin: RECCAP2_region_masks_all_v20221025.nc
+
+- obs space:
+    name: icec_ssmis_f17_l2
+    provider: MIRS
+    dmpdir subdir: ocean/icec
+    type: nc
+    dmpdir regex: 'NPR-MIRS-IMG_v11r4_f17_s*.nc'
+    ocean basin: RECCAP2_region_masks_all_v20221025.nc
+
 # SST
 - obs space:
     name: sst_avhrr_ma_l3u