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Add data ocean support and add support for reading modelio:: attribute group ... #106

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uturuncoglu
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@uturuncoglu uturuncoglu commented Jun 29, 2021

This PR aims to bring data ocean support to NEMS, which is related to the issue #107. It also includes fix for reading modelio attributes from nems.configure and passing it to the CDEPS and CMEPS in case of it is defined.

danrosen25 and others added 15 commits December 6, 2019 22:19
Merge feature/hafs_couplehycom branch back into support/HAFS branch

Preparations for external PIO (Ufuk)
*Added CPP -DPIO to wrap calls to pio library
*component_CDEPS.mk added to configure CDEPS build
*component_CDEPS_DATM.mk added to configure CDEPS_DATM build
*component_CDEPS_DOCN.mk added to configure CDEPS_DOCN build
*component_CMEPS.mk CMEPS-INSTALL moved, default INTERNAL_PIO_INIT added
*component_HYCOM.mk added extra build call to HYCOM model
*module_EARTH_GRID_COMP.F90 added FRONT_CDEPS_DATM and FRONT_CDEPS_DOCN, added pio initialization
Added diagnostics (Dan)
*module_EARTH_GRID_COMP.F90 added connector diagnostics configuration

Co-authored-by: Ufuk Turuncoglu <[email protected]>
Co-authored-by: Daniel Rosen <[email protected]>
@MinsukJi-NOAA
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I ran UFS-weather-model regression tests with this NEMS changes on Hera. All gnu passed. All intel passed except for control_atm_aerosols, which resulted in MPI_Abort. Tried it 4 times and all failed. Can any one try this test case on Hera and verify?

@uturuncoglu
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@MinsukJi-NOAA i am not sure but this could be an issue related with recently added GOCART chemistry component.

@junwang-noaa
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@MinsukJi-NOAA where is your RT run directory with the failed control_atm_aerosols test?

@MinsukJi-NOAA
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@MinsukJi-NOAA where is your RT run directory with the failed control_atm_aerosols test?

LOGDIR: /scratch2/NCEPDEV/stmp1/Minsuk.Ji/ufs-weather-model/tests/log_hera.intel

RUNDIR: /scratch1/NCEPDEV/stmp2/Minsuk.Ji/FV3_RT/rt_64975/control_atm_aerosols

@DeniseWorthen
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DeniseWorthen commented Jul 16, 2021

The PET000 log shows PET000 module_EARTH_GRID_COMP.F90:453 Not valid - No component gocart found. I think the branch needs to be updated w/ the current head of NEMS.

@MinsukJi-NOAA
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The PET000 log shows PET000 module_EARTH_GRID_COMP.F90:453 Not valid - No component gocart found. I think the branch needs to be updated w/ the current head of NEMS.

I think you are right. #102 was merged in after this PR was submitted.

@junwang-noaa
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Yes, there is no gocart in module_EARTH_GRID_COMP.F90. @uturuncoglu please merge with the latest nems develop branch.

[Jun.Wang@hfe11 src]$ grep -i "gocart" module_EARTH_GRID_COMP.F90
[Jun.Wang@hfe11 src]$

@BinLiu-NOAA
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@junwang-noaa @MinsukJi-NOAA @DeniseWorthen @uturuncoglu, I have just synced this feature/hafs_couplehycom_cdeps branch with the latest develop branch.

@MinsukJi-NOAA
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control_atm_aerosols regression test passed. This PR is good for merge into UFS-weather-model @junwang-noaa @DeniseWorthen

@junwang-noaa
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junwang-noaa commented Jul 16, 2021 via email

@DeniseWorthen
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Yes that would be fine. I will switch my .gitmodules to point to the PR branch.

@MinsukJi-NOAA
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@BinLiu-NOAA #104 is expected to be merged in today. Please update the feature/hafs_couplehycom_cdeps branch once again after that since this PR is scheduled for early next week.

@BinLiu-NOAA
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@BinLiu-NOAA #104 is expected to be merged in today. Please update the feature/hafs_couplehycom_cdeps branch once again after that since this PR is scheduled for early next week.

Will do. Thanks @MinsukJi-NOAA!

@DeniseWorthen
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@BinLiu-NOAA Could you please update to the NEMS commit from today? Thanks.

@BinLiu-NOAA
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@MinsukJi-NOAA @DeniseWorthen, have just synced with the latest develop branch as of this afternoon (07/16/2021). Thanks!

@MinsukJi-NOAA MinsukJi-NOAA merged commit e17870e into NOAA-EMC:develop Jul 20, 2021
@BinLiu-NOAA BinLiu-NOAA deleted the feature/hafs_couplehycom_cdeps branch July 25, 2021 20:53
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9 participants