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CI maintenance updates and adding CI Unit Tests #2740

Merged
merged 226 commits into from
Jul 11, 2024
Merged

CI maintenance updates and adding CI Unit Tests #2740

merged 226 commits into from
Jul 11, 2024

Commits on May 6, 2024

  1. added development Jenkninsfile for dispatching from GitHub Actions

    @TerryMcGuinness-NOAA
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Commits on May 8, 2024

  1. Merge branch 'NOAA-EMC:develop' into feature/jenkins-dispatch

    @TerrenceMcGuinness-NOAA
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  2. updated method for counting status cases from rocotostat

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  3. started a unit test for rocotostat

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  4. added more moc args

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  5. updated third arg to moc

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  6. removed moc stuff from test

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  7. added data for unit testing rocotostat

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  8. moved tests dir for ci unit tests under scripts

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  9. added ci unit tests using pytest

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  10. chris H has install.h spelled INSTALL

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  11. added path to rocotostat in GitHub runner

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  12. added path relative to sript for input data

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  13. did not put in path for artifacts on success to unittess

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  14. details for artifacts and new actions file

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  15. syntax errors in ci unit tests actions yaml file

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  16. added report in UI

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  17. trying another reportor

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  18. needed update permitions for report

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  19. added conclution to pytest ci

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  20. indetation error in ci-pyunit acdtion file

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  21. removed conclution in messages

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  22. job_summary did not work

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  23. more publish and config report

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  24. more publish and config report path update

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  25. added full path to xml output

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  26. needed space for name

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  27. needed space for name

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  28. had name wrong was file name up upload

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  29. took out upload

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  30. added docstrings to functions

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  31. removing Jenkins dispatch file

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  32. added verbose in the pytest argument to list each test

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Commits on May 9, 2024

  1. Merge branch 'NOAA-EMC:develop' into ci_unit-tests

    @TerrenceMcGuinness-NOAA
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Commits on May 10, 2024

  1. Merge branch 'NOAA-EMC:develop' into ci_unit-tests

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  2. moved test data specfic to rocotostat tests in test directory and neu… 

    …tered XML file
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  3. Merge branch 'ci_unit-tests' of github.com:TerrenceMcGuinness-NOAA/gl… 

    …obal-workflow into ci_unit-tests
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  4. cashed install of Rocoto in actions runner

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  5. update cashe action to version 4

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  6. added test data for rocotocheck stalled case

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  7. added stalled and done as functions and added two more unit tests for… 

    … each in rocotostatus
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  8. added doctrings to new functions in rocotstat

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  9. updated pynorm spaces

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  10. do not need to assert is set to true, it just is

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  11. Merge pull request #286 from TerrenceMcGuinness-NOAA/ci_unit-tests_st… 

    …alled

Added specific test data directories and added separate functions and unit tests for DONE and STALLED.
    @TerrenceMcGuinness-NOAA
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  12. cashe after intall or Rocoto silly

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Commits on May 13, 2024

  1. Merge branch 'ci_unit-tests' of github.com:TerrenceMcGuinness-NOAA/gl… 

    …obal-workflow into ci_unit-tests
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  2. removded all rocoto test data and put them in S3 bucket and have them… 

    … downloaded using curl when not present
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  3. fix pynorms and install wget in runner to download test data

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  4. removed stub files and added .gitkeep and correspondingly update uint… 

    … test
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  5. pycodestyle indenetation fix

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  6. cd into the ci test dir and run pytest there to resolve paths correctly

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  7. update path to test results for them to be published

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  8. put in full path to test resultes because the weill not read and move… 

    …d cashe save off of Rotoco to after it is installed
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  9. trying to debug output test results xml file

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  10. using relative path in Pub reslutes and updated test for cashed Rocot… 

    …o install
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  11. the cached section has to come before the install of Rocoto because i… 

    …t also servese as the restore set
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  12. moved Cache to before install of Rocoto because it had a duel purpose… 

    … of restoring caches that have been created
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Commits on May 14, 2024

  1. Update .github/workflows/ci-unit_tests.yaml 

    So it runs again on push?

Co-authored-by: Walter Kolczynski - NOAA <[email protected]>
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  2. Update .github/workflows/ci-unit_tests.yaml 

    Co-authored-by: Walter Kolczynski - NOAA <[email protected]>
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  3. removed caps in docstrings and testing write permissions to pr in act… 

    …ions
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  4. made deep copies of objects in calls to --all and --summary are disti… 

    …nct and only -w ane -d are re-used
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Commits on May 15, 2024

  1. Update .github/workflows/ci-unit_tests.yaml 

    yep lets leave it in

Co-authored-by: Walter Kolczynski - NOAA <[email protected]>
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Commits on May 20, 2024

  1. Update .github/workflows/ci-unit_tests.yaml 

    That should work

Co-authored-by: Walter Kolczynski - NOAA <[email protected]>
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Commits on May 21, 2024

  1. added a attempt_multiple_times routine to the python rocotostat utili… 

    …ty for robustness
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  2. it is workflow_dispatch not dispatch

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Commits on May 29, 2024

  1. merged develop

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  2. merged in changes to rocoto check from develop

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  3. added docstring to attempt_multiple_times in the rocoso stat code

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  4. use wxflow on disk and added link_workflow and removed pip install wx… 

    …flow
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  5. misspelled link_workflow.sh

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  6. add link up wxflow because virt env was not current

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  7. moved making of wxflow links into test section

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  8. removed pytest junit install

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  9. added PYTHONPATH for tests

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  10. added redundent wxflow as a pip install

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  11. no comma seperator in pip install

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  12. pip install wxflow from develop branch

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Commits on May 30, 2024

  1. Merge branch 'develop' into ci_unit-tests

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  2. added unit test to test setup_expt and setup_xml

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  3. added /work/noaa dir on running to make pass Host() as oroin

    terrance.mcguinness committed May 30, 2024
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  4. remove env from setup xml

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  5. Merge branch 'ci_unit-tests' of github.com:TerrenceMcGuinness-NOAA/gl… 

    …obal-workflow into ci_unit-tests
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  6. pynorms and unset EXPDR in runner shell

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  7. added more pynorms

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  8. shortend path to PSLOT

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  9. removed push and made full paths to test data for tesgint setups

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  10. trying to remove EXPDIR from env

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  11. trying to remove EXPDIR from runner env

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  12. added wxflow update to runner for test setups

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  13. Update ci/scripts/utils/rocotostat.py 

    Co-authored-by: Walter Kolczynski - NOAA <[email protected]>
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  14. Update ci/scripts/utils/rocotostat.py 

    Co-authored-by: Walter Kolczynski - NOAA <[email protected]>
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  15. use updated wxflow config in this test pr

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  16. Merge branch 'ci_unit-tests' of github.com:TerrenceMcGuinness-NOAA/gl… 

    …obal-workflow into ci_unit-tests
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  17. added ACCOUT to env for testing updates

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  18. checklut output from setup exp in runner

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Commits on May 31, 2024

  1. echo EXPDIR and cat config.bas in runner

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  2. cleaned up path to RUNDIR data to PSLOT

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  3. made one function and added a pause just to see if it is ot on dixk y… 

    …et or wtf
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  4. added debug outputs in setup xml

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  5. use develop wxflow

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  6. narrowing in on issue that we are not getting base with my update

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  7. more dubugging outputs

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  8. more dubugging outputs againZ

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  9. test if EXPDIR is in base

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  10. added checkout of wxflow and running lit link on the runner

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  11. misspelled update in git command

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  12. needed ./ for runnign link in sorc

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  13. add checkout of gfs_utils for detect machine

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  14. added extra ln for wxflow import in test dir

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  15. added the pip intall bit for wxflow from forked branch with updates f… 

    …or xor
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  16. did a full init submodule in the runner

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  17. print config object in setup xml on running

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  18. revert to wxflow develop and pip install wxflow

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  19. mud hurling with python 3.7.16 and bash in runner

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  20. add directive to use bash in running tests in runner

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  21. comment out setup xml line

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  22. remove extra clons and python leader to exp code

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  23. trying to submodule only wxflow and gsi_utils

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  24. added code for bash in config

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  25. updated pip clone from forked wxflow and removed some smack

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  26. restored setup xml

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  27. condenced the test themselfs

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  28. just removed line for extra var to setup_expt

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  29. updated HPC_ACCOUNT to ACCOUNT in bash config of ci platforms to test… 

    … updates to wxflow configuration.py
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  30. Delete ci/scripts/tests/wxflow 

    delete
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Commits on Jun 3, 2024

  1. Merge branch 'develop' into ci_unit-tests

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Commits on Jun 4, 2024

  1. added addtional check to make sure the Configure object is getting po… 

    …pululated correctly after config parms are in place
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Commits on Jun 5, 2024

  1. added more details to testing Configuration updates and consolidation… 

    … of paths
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  2. few shell norms

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  3. pynorm spaces in test codes

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  4. moved shell script that performs the export to the test code and adde… 

    …d a check for the users value not in the parm
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  5. single pynorm white space

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  6. added HOMEgfs and checked for no UNKNOWN

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  7. removed {} from script string

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  8. removed gsi_utils from Runner

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  9. did not need detect machine in gsi utils

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  10. udate wxflow updates to the PR

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Commits on Jun 6, 2024

  1. hardened the test to include the corner case when a user sets an envi… 

    …roment varialble to the same value that is the par name space
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  2. update to latest update of configuration.py in wxflow (using grep for… 

    … KEY= in parm files)
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Commits on Jun 11, 2024

  1. Merge branch 'NOAA-EMC:develop' into ci_unit-tests

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Commits on Jun 24, 2024

  1. Merge branch 'NOAA-EMC:develop' into ci_unit-tests

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  2. added fix to rocotostat for stalled case and remove dependances to up… 

    …dates to wxflow
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  3. update to current gitmodules without wxflow updates

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  4. update to default wxflow

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  5. needed pynorms space after :

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  6. still need to do the pip install of wxflow to get all the Jinja stuff… 

    … too
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Commits on Jun 25, 2024

  1. Merge branch 'NOAA-EMC:develop' into ci_unit-tests

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  2. Update ci/scripts/tests/test_setup.py 

    Oh my

Co-authored-by: Rahul Mahajan <[email protected]>
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  3. Update ci/scripts/tests/test_setup.py 

    How embarrassing.

Co-authored-by: Rahul Mahajan <[email protected]>
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  4. updated to python wget and renamed github action control file

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  5. removed other yaml action file

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  6. added mkdir -p to full path to testdata

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  7. updated python install in runner to 3.13.0

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  8. updated python install in runner to 3.12.3 for x64 Ubu

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  9. updated pytest to version 8.2.2

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  10. removed verson of pytest got get latest for pythohn 3.13.3

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  11. removed verson of wxflow

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  12. downgraded to python 3.11.8 because distutils was depretiated from 3.12

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  13. took out shell wrapper that was exporting env vars

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  14. added extra subdir for pysdo hera file system

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  15. investigating EXPDIR

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  16. investigating EXPDIR

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  17. still trying to debug EXPDIR key error

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  18. still trying to debug EXPDIR key error still

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  19. adding in the other tests

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  20. adding in the other tests crap

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  21. outputing EXPDIR before running Config in setup xml

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  22. outputing EXPDIR before running Config in setup xml 2

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  23. tring env unclaching wxflow repo to see if it is solving the EXPDIR p… 

    …roblem with setup_xml
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  24. try test with updated wxflow (if works then get to that fix)

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Commits on Jun 26, 2024

  1. added corner case for checking expected fail for when name snapces ar… 

    …e irreconcilable when set to same vaule in config file
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  2. Merge branch 'NOAA-EMC:develop' into ci_unit-tests

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  3. no op for ci self test

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Commits on Jun 27, 2024

  1. Merge branch 'NOAA-EMC:develop' into ci_unit-tests

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  2. reverted wxflow to develop in github runner

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  3. removed setting name clashes in create expt test

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  4. updated wxfow directly in runner

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  5. had a mistake in setting ACCOUNT in yaml defaults

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  6. had to checkout gfs_utils because link script uses detect machine in … 

    …there
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  7. added bash update branch for Configure class in wxflow

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  8. spelled WORKSPACE wrong

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  9. updated git wxflow module to use branch donfig_env_bash

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  10. removed wxflow branch designation and moved it to git modules file

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  11. updated wxflow to config_env_bash branch

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  12. updated gitmodules and added explicit checkout of config_env_bash

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  13. downgraded python3 to 3.6.8 because sourcing config.fcst is failing

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  14. cloned config_env_xor to find a success path for this branches unit t… 

    …ests again
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  15. reverted back to python 3.11.8

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  16. changed -branch to -b in git clone wxflow

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  17. needed other repos for this case in the setup unit test

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  18. needed to pip install config_env_bash when resolving import wxflow in… 

    … test codes
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  19. restored pytest line with results specified

    @TerryMcGuinness-NOAA
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Commits on Jun 28, 2024

  1. reverting back to wxflow develop

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  2. added soft link to wxflow for running in ci unit test dir

    @TerryMcGuinness-NOAA
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  3. updated publish to use laten-1 decoding for handeling color control c… 

    …hars
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  4. added test for creatig experment

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  5. added EXPDIR that was missing in PR message ponting to where it is on… 

    … disk
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  6. fixed lingering HPC_ACCOUT and cleaned up old setup xml test

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  7. fixed pynorms spacing and git tab line in gitmoduels

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Commits on Jul 1, 2024

  1. Update ci/scripts/tests/test_create_experiment.py 

    oh my

Co-authored-by: David Huber <[email protected]>
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  2. Update ci/scripts/tests/test_setup.py 

    Co-authored-by: David Huber <[email protected]>
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  3. Update ci/scripts/tests/test_setup.py 

    sure why not

Co-authored-by: David Huber <[email protected]>
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    TerrenceMcGuinness-NOAA and DavidHuber-NOAA authored Jul 1, 2024
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  4. no op for ci self test

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  5. Merge branch 'TerrenceMcGuinness-NOAA-ci_unit-tests_wxflow_develop' i… 

    …nto develop
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  6. the tripple sing quoting for srting output icludes the charage return… 

    …s after all
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  7. Update ci/scripts/tests/test_setup.py 

    I keep checking that back in 'eye-roll emoji'

Co-authored-by: Rahul Mahajan <[email protected]>
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    TerrenceMcGuinness-NOAA and aerorahul authored Jul 1, 2024
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  8. corrected typo of unit test github control file

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  9. removed no-op line from driver

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Commits on Jul 2, 2024

  1. Merge branch 'develop' into ci_unit-tests_wxflow_develop

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Commits on Jul 3, 2024

  1. trying failFast false in build stage to see if we can get it to proce… 

    …ed to Finilize upon issuing and error
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  2. tring to use catchError block over the buid stage instead

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  3. added fail flag and failFast true to gracious gracious build fails

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  4. force error on checkout too with update catch block

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  5. added parallelsAlwaysFailFast becsue failFast alone did not work, als… 

    …o issued error() on checkout fail
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  6. options block with parallelsAlwaysFailFast was not valid for matrix

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Commits on Jul 4, 2024

  1. Update ci/scripts/tests/test_create_experiment.py 

    yes

Co-authored-by: Rahul Mahajan <[email protected]>
    @TerrenceMcGuinness-NOAA @aerorahul
    TerrenceMcGuinness-NOAA and aerorahul authored Jul 4, 2024
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  2. Merge branch 'develop' into ci_unit-tests_wxflow_develop

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Commits on Jul 8, 2024

  1. Merge branch 'NOAA-EMC:develop' into ci_unit-tests_wxflow_develop

    @TerrenceMcGuinness-NOAA
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Commits on Jul 10, 2024

  1. Merge branch 'NOAA-EMC:develop' into ci_unit-tests_wxflow_develop

    @TerrenceMcGuinness-NOAA
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  2. added try block on create experment so message is set to user and lab… 

    …el is updated to fail
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  3. test creating of all ci pr experments

    terrance.mcguinness committed Jul 10, 2024
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  4. added all yaml cases for create experement that do not have IC to uni… 

    …t tests
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  5. fixed indent in create test and catch sytnax in pipeline

    terrance.mcguinness committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. added paralelsAlwaysFailFast in Jenkins Pipeline

    terrance.mcguinness committed Jul 11, 2024
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  2. Merge branch 'NOAA-EMC:develop' into ci_unit-tests_wxflow_develop

    @TerrenceMcGuinness-NOAA
    TerrenceMcGuinness-NOAA authored Jul 11, 2024
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