add debug flags to GNU CI and fix remaining failures #716
Workflow file for this run
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| on: pull_request | |
| # cancel running jobs if theres a newer push | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| intel-autotools: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| io-flag: ["--disable-deprecated-io", "--enable-deprecated-io"] | |
| container: | |
| image: intel/oneapi-hpckit:2023.1.0-devel-ubuntu20.04 | |
| env: | |
| CC: mpiicc | |
| FC: mpiifort | |
| CFLAGS: "-I/libs/include" | |
| FCFLAGS: "-I/libs/include -g -traceback" | |
| LDFLAGS: "-L/libs/lib" | |
| TEST_VERBOSE: 1 | |
| I_MPI_FABRICS: "shm" # needed for mpi in image | |
| # intel bug causes some failures with shm option(required in container) | |
| SKIP_TESTS: "test_mpp_update_domains.1 test_update_domains_performance.1 test_diag_manager2.23" | |
| steps: | |
| - name: Cache dependencies | |
| id: cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: /libs | |
| key: ${{ runner.os }}-intel-libs | |
| - name: Install packages for building | |
| run: apt-get update && apt-get install -y autoconf libtool automake zlibc zlib1g-dev | |
| - if: steps.cache.outputs.cache-hit != 'true' | |
| name: Build netcdf | |
| run: | | |
| mkdir /libs | |
| wget https://hdf-wordpress-1.s3.amazonaws.com/wp-content/uploads/manual/HDF5/HDF5_1_12_2/source/hdf5-1.12.2.tar.gz | |
| tar xf hdf5-1.12.2.tar.gz && cd hdf5-1.12.2 | |
| ./configure --prefix=/libs | |
| make -j install && cd .. | |
| wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.8.1.tar.gz | |
| tar xf v4.8.1.tar.gz && cd netcdf-c-4.8.1 | |
| ./configure --prefix=/libs --enable-remote-fortran-bootstrap | |
| make -j install | |
| # sets this here to pass embeded configure checks | |
| export LD_LIBRARY_PATH="/libs/lib:$LD_LIBRARY_PATH" | |
| make -j -k build-netcdf-fortran | |
| make -j install-netcdf-fortran | |
| wget https://github.com/yaml/libyaml/releases/download/0.2.5/yaml-0.2.5.tar.gz | |
| tar xf yaml-0.2.5.tar.gz && cd yaml-0.2.5 | |
| ./configure --prefix=/libs | |
| make -j install && cd | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - name: Configure | |
| run: | | |
| autoreconf -if ./configure.ac | |
| export LD_LIBRARY_PATH="/libs/lib:$LD_LIBRARY_PATH" | |
| ./configure --with-yaml ${{ matrix.io-flag }} | |
| - name: Compile | |
| run: make -j || make | |
| - name: Run test suite | |
| run: make check LD_LIBRARY_PATH="/libs/lib:$LD_LIBRARY_PATH" TEST_VERBOSE=1 |