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Merge branch 'ufs-community:develop' into develop #20

Merge branch 'ufs-community:develop' into develop

Merge branch 'ufs-community:develop' into develop #20

Workflow file for this run

name: intel
on: [push, pull_request]
# Use custom shell with -l so .bash_profile is sourced which loads intel/oneapi/setvars.sh
# without having to do it in manually every step
defaults:
run:
shell: bash -leo pipefail {0}
jobs:
intel-build-and-test:
runs-on: ${{ matrix.os }}
env:
CC: icc
FC: ifort
CXX: icpc
strategy:
matrix:
os: [ubuntu-latest]
steps:
# See https://software.intel.com/content/www/us/en/develop/articles/oneapi-repo-instructions.html
- name: install-intel
run: |
cd /tmp
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
sudo apt-get update
sudo apt-get install intel-oneapi-dev-utilities intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic
echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile
- name: cache-netcdf
id: cache-netcdf
uses: actions/cache@v2
with:
path: ~/netcdf
key: netcdf-c-$4.7.4-{{ runner.os }}-intel3
- name: build-hdf5
if: steps.cache-netcdf.outputs.cache-hit != 'true'
run: |
export CC=mpiicc
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz &> /dev/null
tar -xzf hdf5-1.10.7.tar.gz
pushd hdf5-1.10.7
./configure --prefix=${HOME}/netcdf --enable-parallel --disable-tools --disable-fortran --disable-cxx --enable-parallel-tests --disable-shared --disable-shared --enable-static
make -j2
make install
- name: build-netcdf-c
if: steps.cache-netcdf.outputs.cache-hit != 'true'
run: |
export CC=mpiicc
export CPPFLAGS=-I${HOME}/netcdf/include
export LDFLAGS=-L${HOME}/netcdf/lib
wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.4.tar.gz &> /dev/null
tar -xzf v4.7.4.tar.gz
pushd netcdf-c-4.7.4
./configure --prefix=${HOME}/netcdf --disable-dap --disable-utilities --disable-shared
make -j2
make install
- name: build-netcdf-fortran
if: steps.cache-netcdf.outputs.cache-hit != 'true'
run: |
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:${HOME}/netcdf/lib"
export PATH="${HOME}/netcdf/bin:$PATH"
export CC=mpiicc
export FC=mpiifort
export CPPFLAGS=-I${HOME}/netcdf/include
export LDFLAGS=-L${HOME}/netcdf/lib
export LIBS=`nc-config --libs`
wget https://github.com/Unidata/netcdf-fortran/archive/v4.5.3.tar.gz &> /dev/null
tar -xzf v4.5.3.tar.gz
pushd netcdf-fortran-4.5.3
./configure --prefix=${HOME}/netcdf --disable-shared
make -j2
make install
- name: cache-esmf
id: cache-esmf
uses: actions/cache@v2
with:
path: ~/esmf
key: esmf-8.2.0-${{ runner.os }}-intel3
- name: build-esmf
if: steps.cache-esmf.outputs.cache-hit != 'true'
run: |
pushd ~
export ESMF_DIR=~/esmf-ESMF_8_2_0
wget https://github.com/esmf-org/esmf/archive/ESMF_8_2_0.tar.gz &> /dev/null
tar zxf ESMF_8_2_0.tar.gz
cd esmf-ESMF_8_2_0
export ESMF_COMM=intelmpi
export ESMF_INSTALL_BINDIR=bin
export ESMF_INSTALL_LIBDIR=lib
export ESMF_INSTALL_MODDIR=mod
export ESMF_COMPILER=intel
export ESMF_INSTALL_PREFIX=~/esmf
export ESMF_NETCDF=split
export ESMF_NETCDF_INCLUDE=${HOME}/netcdf/include
export ESMF_NETCDF_LIBPATH=${HOME}/netcdf/lib
export ESMF_NETCDF_LIBS="-lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz"
make -j2
make install
- name: cache-jasper
id: cache-jasper
uses: actions/cache@v2
with:
path: ~/jasper
key: jasper-2.0.25-${{ runner.os }}-intel3
- name: build-jasper
if: steps.cache-jasper.outputs.cache-hit != 'true'
run: |
wget https://github.com/jasper-software/jasper/archive/version-2.0.25.tar.gz &> /dev/null
tar zxf version-2.0.25.tar.gz
cd jasper-version-2.0.25
mkdir build-jasper && cd build-jasper
cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper -DJAS_ENABLE_SHARED=OFF
make -j2
make install
- name: checkout-nceplibs
uses: actions/checkout@v2
with:
repository: NOAA-EMC/NCEPLIBS
path: nceplibs
- name: cache-nceplibs
id: cache-nceplibs
uses: actions/cache@v2
with:
path: ~/nceplibs
key: nceplibs-1.4.0-${{ runner.os }}-intel3
- name: build-nceplibs
if: steps.cache-nceplibs.outputs.cache-hit != 'true'
run: |
export ESMFMKFILE=~/esmf/lib/esmf.mk
wget https://github.com/NOAA-EMC/NCEPLIBS/archive/v1.4.0.tar.gz &> /dev/null
tar zxf v1.4.0.tar.gz
cd NCEPLIBS-1.4.0
mkdir build && cd build
cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper;~/netcdf' -DCMAKE_INSTALL_PREFIX='~/nceplibs' -DFLAT=ON
make -j2
- name: checkout-ufs-utils
uses: actions/checkout@v2
with:
path: ufs_utils
submodules: recursive
- name: build
run: |
export ESMFMKFILE=~/esmf/lib/esmf.mk
cd ufs_utils
mkdir build && cd build
export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64"
cmake .. -DCMAKE_BUILD_TYPE=Debug -DCMAKE_PREFIX_PATH='~;~/jasper;~/nceplibs;~/netcdf'
make -j2
- name: test
run: |
cd ufs_utils/build
ctest --rerun-failed --output-on-failure