Fix issue with binary scripted model

VERSION

@@ -1 +1 @@
-3.0.0
+3.1.0

geo_inference/__init__.py

@@ -1,4 +1,4 @@
 """Geo-inference: Extract features from high-resolution geospatial imagery using foundation models"""
 
 __author__ = "Victor Alhassan"
-__version__ = "3.0.0"
+__version__ = "3.1.0"

geo_inference/geo_dask.py

@@ -298,7 +298,6 @@ def sum_overlapped_chunks(
                     where=full_array[-1, :, :] != 0,
                 )
                 if final_result.shape[0] == 1:
-                    final_result = expit(final_result)
                     final_result = (
                         np.where(final_result > prediction_threshold, 1, 0).squeeze(0).astype(np.uint8)
                     )

geo_inference/geo_inference.py

@@ -261,12 +261,12 @@ async def async_run_inference(self,
                         ):
                             if self.json is None:
                                 aoi_dask_array = xr.concat(
-                                    [aoi_dask_array[i - 1, :, :] for i in bands_requested],
+                                    [aoi_dask_array[int(i) - 1, :, :] for i in bands_requested],
                                     dim="band"
                                 )
                             else:
                                 aoi_dask_array = da.stack(
-                                    [aoi_dask_array[i - 1, :, :] for i in bands_requested],
+                                    [aoi_dask_array[int(i) - 1, :, :] for i in bands_requested],
                                     axis =0,
                                 )
                 except Exception as e:

geo_inference/utils/helpers.py

@@ -448,8 +448,8 @@ def cmd_interface(argv=None):
     parser.add_argument(
         "-br",
         "--bands_requested",
-        nargs=1,
-        help="bands_requested in this format['Red','Green','Blue'] or [1,2,3]",
+        nargs="*",
+        help="bands_requested in this format '-b Red Green Blue' or '-br 1 2 3'",
     )
 
     parser.add_argument(
@@ -512,7 +512,7 @@ def cmd_interface(argv=None):
         model = args.model[0] if args.model else None
         bbox = args.bbox[0] if args.bbox else None
         work_dir = args.work_dir[0] if args.work_dir else None
-        bands_requested = args.bands_requested[0] if args.bands_requested else []
+        bands_requested = args.bands_requested if args.bands_requested else []
         workers = args.workers[0] if args.workers else 0
         vec = args.vec[0] if args.vec else False
         yolo = args.yolo[0] if args.yolo else False

pyproject.toml

@@ -37,7 +37,7 @@ geo_inference = "geo_inference.geo_inference:main"
 include = ["geo_inference*"]
 
 [tool.bumpver]
-current_version = "3.0.0"
+current_version = "3.1.0"
 version_pattern = "MAJOR.MINOR.PATCH"
 commit_message = "bump version {old_version} -> {new_version}"
 commit = true

tests/utils/test_helpers.py

@@ -155,14 +155,14 @@ def test_cmd_interface_with_args(monkeypatch, test_data_dir):
 
 def test_cmd_interface_with_image(monkeypatch):
     # Mock the command line arguments
-    monkeypatch.setattr('sys.argv', ['prog', '-i', 'image.tif'])
+    monkeypatch.setattr('sys.argv', ['prog', '-i', 'image.tif', '-br', '1', '2', '3'])
     # Call the function
     result = cmd_interface()
     # Assert the result
     assert result == {
         "image": "image.tif",
         "bbox": None,
-        "bands_requested" : [],
+        "bands_requested" : ['1', '2', '3'],
         "workers": 0,
         "model": None,
         "work_dir": None,