LSDC - Life Sciences Data Collection

Author: John Skinner, formerly of National Synchrotron Light Source II, Brookhaven National Laboratory, NY

Currently used at the NSLS-II MX beamlines - AMX, FMX

Offline fork of https://github.com/jskinner53/lsdc

Documentation: http://nsls-ii.github.io/lsdc/

Name	Name	Last commit message	Last commit date
Latest commit vshekar Merge pull request #399 from vshekar/cs8-and-floco-recoveries Jan 29, 2025 10cac1b · Jan 29, 2025 History 1,935 Commits
.github/workflows	.github/workflows	CI: `keep_files: false` -> `true`	Jan 20, 2023
bin	bin	remove overlay from pythonpath	Jul 22, 2024
dev_utils	dev_utils	Added precise NYX measurements to DB create script to keep them in li…	Oct 27, 2021
docs	docs	update release date	Jan 22, 2024
gui	gui	Add exception to handle unknown file formats	Dec 19, 2024
mxbluesky	mxbluesky	Fixed typo in daq_macros and merged import in generic devices	Jan 28, 2025
utils	utils	Merge branch 'master' into data-security-guardrails	Nov 22, 2024
.gitignore	.gitignore	add gitignore - don't watch all of the old copies	Jan 31, 2020
Gen_Commands.py	Gen_Commands.py	add logging	Feb 24, 2020
Gen_Traj_Square.py	Gen_Traj_Square.py	make log messages in exception handling code errors	Mar 9, 2020
INSTALL.md	INSTALL.md	update installation directions	Apr 23, 2021
LICENSE	LICENSE	Create LICENSE	Feb 26, 2020
QPeriodicTable.py	QPeriodicTable.py	fix signals going into elementEnterSignal	Jun 30, 2020
README.md	README.md	Add link to documentation on github.io	Feb 3, 2023
attenCalc.py	attenCalc.py	remove unused imports	Mar 10, 2020
beamline_lib.py	beamline_lib.py	use zebra and vector as parameters instead of from start_bs	Nov 5, 2021
beamline_support.py	beamline_support.py	Added nyx specific imports	Jul 22, 2024
config_params.py	config_params.py	Fixed config param for FMX and fixed goniometer	Dec 18, 2024
daq_lib.py	daq_lib.py	Merge branch 'master' into cs8-and-floco-recoveries	Jan 28, 2025
daq_macros.py	daq_macros.py	Fixed typo in daq_macros and merged import in generic devices	Jan 28, 2025
daq_main2.py	daq_main2.py	Merge branch 'master' into data-security-guardrails	Nov 22, 2024
daq_mainAux.py	daq_mainAux.py	update scripts to use lsdc-server-2023-2-latest	Apr 21, 2023
daq_main_common.py	daq_main_common.py	Reduced repitition in daq_main_common	Sep 20, 2024
daq_utils.py	daq_utils.py	Merge branch 'master' into data-security-guardrails	Nov 22, 2024
db_lib.py	db_lib.py	Apply suggestions from code review	Nov 22, 2024
denso_robot.py	denso_robot.py	adds backend for parkRobot	Jul 22, 2024
det_lib.py	det_lib.py	remove unused imports	Mar 10, 2020
element_info.py	element_info.py	remove commented-out code	Mar 2, 2020
embl_robot.py	embl_robot.py	Merge branch 'virtual-dewar' into cs8-and-floco-recoveries	Jan 28, 2025
epics_det.py	epics_det.py	improve comment on arming failure	Aug 19, 2021
fmx_annealer.py	fmx_annealer.py	fix import of SubscriptionStatus	Jan 18, 2023
gon_lib.py	gon_lib.py	Added nyx specific imports	Jul 22, 2024
gov_lib.py	gov_lib.py	message converted to logger.warning	Jan 17, 2023
h5_template.dat	h5_template.dat	NYX: dozor input file requires different values	Mar 23, 2023
ispybLib.py	ispybLib.py	enable use of alternative ISPyB config files	Jun 17, 2024
kafka_producer.py	kafka_producer.py	use system kafka config for runengine	Sep 9, 2022
lsdb1.py	lsdb1.py	remove unused imports	Mar 10, 2020
lsdcGui.py	lsdcGui.py	move GUI current and visit directory check to healthcheck	Jun 6, 2023
lsdcOlog.py	lsdcOlog.py	remove unused imports	Mar 10, 2020
lsdcServer	lsdcServer	Merge branch 'master' into one-branch-to-rule-them-all	Jun 30, 2023
mountCounter.py	mountCounter.py	update scripts to use lsdc-server-2023-2-latest	Apr 21, 2023
parseSheet.py	parseSheet.py	Merge branch 'master' into one-branch-to-rule-them-all	May 5, 2022
raddoseLib.py	raddoseLib.py	Cleanup and formatting	Sep 8, 2023
requirements-dev.txt	requirements-dev.txt	trim down requirements	Jan 18, 2022
robot_lib.py	robot_lib.py	adds backend for parkRobot	Jul 22, 2024
robot_template.py	robot_template.py	EMBL robot fixes	Mar 23, 2022
runEdna.py	runEdna.py	Fix edna col (#276 )	Apr 12, 2023
runFastDPH5.py	runFastDPH5.py	hard code ISPyB DC ID for fastDP processing	Sep 29, 2023
runPinAlign.py	runPinAlign.py	update scripts to use lsdc-server-2023-2-latest	Apr 21, 2023
runSpotFinder4syncW.py	runSpotFinder4syncW.py	update scripts to use lsdc-server-2023-2-latest	Apr 21, 2023
sanitize_sheet.py	sanitize_sheet.py	add tests, fix sanitize_sheet to make things testable	Mar 2, 2020
scans.py	scans.py	fix using a wrong signal in scans.zebra_daq_prep	Mar 2, 2023
setenergy_lsdc.py	setenergy_lsdc.py	Removed commented out code	Apr 25, 2024
start_bs.py	start_bs.py	Merge branch 'master' into cs8-and-floco-recoveries	Jan 28, 2025
sweepDump.py	sweepDump.py	update scripts to use lsdc-server-2023-2-latest	Apr 21, 2023
test_sanitize_sheet.py	test_sanitize_sheet.py	add tests, fix sanitize_sheet to make things testable	Mar 2, 2020
threads.py	threads.py	Merge branch 'master' into data-security-guardrails	Nov 22, 2024
top_view.py	top_view.py	Using subprocess.run() instead of subprocess.Popen() in topview.py	Jun 29, 2023
wrapGui.py	wrapGui.py	update conda env to lsdc-gui-2023-2-latest	Apr 21, 2023

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