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usage doc eddy_quad
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Jenny Chen authored and Jenny Chen committed Oct 23, 2024
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Expand Up @@ -171,7 +171,7 @@ Olesen, J. L., Ianus, A., Østergaard, L., Shemesh, N., & Jespersen, S. N. (2023
- Runs volume-to-volume registration for each DWI image using a mutual information cost function and b-spline interpolation.

### `-eddy_quad_output <path/to/eddy_quad/output/folder>`
- eddy_quad (QC report) will run after -eddy
- `eddy_quad` (QC report) will run after `-eddy`
- Path to a not yet existing folder you want to save eddy_quad output to.
- By default, it will save to the scratch (use `-nocleanup` to save scratch directory) directory (path/to/scratch/eddy_processing/dwi_post_eddy.qc)

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