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@NeLy-EPFL

Neuroengineering Laboratory @ EPFL - Ramdya Lab

We are reverse-engineering the fly, Drosophila melanogaster, to understand how animals leverage social information, learn about the world, and generate flexible motor behaviors. We believe that our efforts will uncover general insights into biological intelligence and can inform the design of better artificial systems and robots.

Flies are ideal for this goal: they generate complex behaviors yet have a small nervous system and are genetically malleable. For our research, we develop and use a variety of approaches including microscopy, machine learning, genetics, and computational modeling. We are part of the Brain Mind Institute and Institute of Bioengineering in the School of Life Sciences at EPFL, Switzerland 🇨🇭.

Some of our recent science and new technologies

For further information, see our Publications page.

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  1. DeepFly3D DeepFly3D Public

    Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

    Jupyter Notebook 86 17

  2. NeuroMechFly NeuroMechFly Public

    A neuromechanical model of adult Drosophila melanogaster.

    Python 44 1

  3. LiftPose3D LiftPose3D Public

    Python 33 4

  4. flygym flygym Public

    Simulating embodied sensorimotor control with NeuroMechFly v2

    Python 20 6

  5. Imaging-Drosophila-VNC-and-CC Imaging-Drosophila-VNC-and-CC Public

    Code used for the paper "Imaging neural activity in the ventral nerve cord and cervical connective of behaving adult Drosophila" by Chen, Hermans, et al. 2018

    Python 2 3

  6. DeepFly3DAnnotation DeepFly3DAnnotation Public

    JavaScript 2

Repositories

Showing 10 of 50 repositories
  • sleap_tools Public

    A repository to regroup useful code to manipulate sleap objects and h5 exports, as well as help and method to setup tracking routines.

    NeLy-EPFL/sleap_tools’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 19, 2024
  • Tracking_Analysis Public

    This repository comprises a set of tools used to perform tracking on behaviour arena data, analysis and plotting.

    NeLy-EPFL/Tracking_Analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Aug 15, 2024
  • DeMotion5D Public

    Remove sample movement from 5D microscopy data (xyz+time+color)

    NeLy-EPFL/DeMotion5D’s past year of commit activity
    Python 0 0 0 0 Updated Aug 15, 2024
  • SeptaCam Public

    Code for controlling the seven-camera system

    NeLy-EPFL/SeptaCam’s past year of commit activity
    C 1 MIT 0 0 0 Updated Aug 5, 2024
  • multimaze_recorder Public

    Tools to operate Matthias' high-throughput recording setup

    NeLy-EPFL/multimaze_recorder’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 29, 2024
  • flygym Public

    Simulating embodied sensorimotor control with NeuroMechFly v2

    NeLy-EPFL/flygym’s past year of commit activity
    Python 20 Apache-2.0 6 4 0 Updated Jul 29, 2024
  • nmf2-paper Public archive

    Code for generating some figures in for the NeuroMechFly v2 paper.

    NeLy-EPFL/nmf2-paper’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Jul 19, 2024
  • utils_behavior Public

    Utility functions to manipulate and analyze behavior videos and associated data (tracking...) acquired in various setups and settings.

    NeLy-EPFL/utils_behavior’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 18, 2024
  • sequential-inverse-kinematics Public

    Sequential inverse kinematics pipeline.

    NeLy-EPFL/sequential-inverse-kinematics’s past year of commit activity
    Python 2 Apache-2.0 0 1 0 Updated Jul 1, 2024
  • _media Public

    This repository is for larger media files (eg. GIFs/videos on the README).

    NeLy-EPFL/_media’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 19, 2024

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