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Merge pull request #444 from Neuroblox/spDCM-tutorial-patch
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Update spectralDCM.jl
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david-hofmann authored Oct 8, 2024
2 parents 1ea99b9 + 63adda0 commit f49298a
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15 changes: 2 additions & 13 deletions docs/src/tutorials/spectralDCM.jl
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# # Spectral Dynamic Causal Modeling Tutorial
# # Introduction
# <table style="width:100%">
# <tr>
# <td style="width:60%">
#
# In this tutorial we will introduce how to perform a spectral Dynamic Causal Modeling analysis on simulated data [1,2].
# To do so we roughly resemble the procedure in the [SPM12](https://www.fil.ion.ucl.ac.uk/spm/software/spm12/) script `DEM_demo_induced_fMRI.m` in [Neuroblox](https://www.neuroblox.org/).
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# We will model fMRI data by a balloon model and BOLD signal on top.
# After simulation of this simple model we will use spectral Dynamic Causal Modeling to infer some of the model parameters from the simulation time series.
#
# ![Workflow illustration](./docs/src/assets/spectral_DCM_illustration.png)
#
# A brief outline of the procedure we will pursue:
# - define the graph, add blocks -> section A, B and C in the figure
# - simulate the model -> instead we could also use actual data, section D in figure
# - compute the cross spectral density
# - setup the DCM
# - estimate parameters
# - plot the results
#
# </td>
# <td>
#
# <img src="./docs/src/assets/spectral_DCM_illustration.png" width="350" height="470" />
#
#
# </td>
# </tr>
# </table>

using Neuroblox
using LinearAlgebra
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