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Bump to MTK v9#342

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MasonProtter merged 59 commits intomasterNeuroblox/Neuroblox.jl:masterfrom mtk9Neuroblox/Neuroblox.jl:mtk9Copy head branch name to clipboardMay 1, 2024

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Commits on Feb 23, 2024

• bump to MTK v9

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Commits on Mar 6, 2024

• some renames

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Commits on Mar 10, 2024

• more fixes

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• fix

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• more fixes to reinforcement learning

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• deepcopy -> copy

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• fix plasticity tests

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Commits on Mar 20, 2024

• get datafitting tests working

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• Merge branch 'master' into mtk9

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• fix update to datafitting

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• bump version

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Commits on Mar 22, 2024

• improve type stability of spectralDCM code

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Commits on Mar 23, 2024

• added an external input to LinearNeuralMass as well as the necessary machinery to deal with it in blox_utilities.jl: function get_states_without_drive

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• finished implementing new feature: sDCM can now potentially deal with external input. Implementation differs from SPM12 since C parameter is not being overwritten when transfer function is being co…

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• merged bold model into BalloonModel. This makes the code more robust w.r.t. potential changes in MTK and pecularities about model assembly. It also deprecates the get_hemodynamic_observers function.

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• implemented new approach to deal with measurements (such as bold signal) based on Haris's comment to use irreducible to maintain measurement equations which are algebraic equations of dynamic varia…

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Commits on Mar 24, 2024

• Merge pull request #345 from Neuroblox/sDCM_add_external_input

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Commits on Mar 26, 2024

• added back OU-JansenRit test

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Commits on Apr 1, 2024

• LIF Neuron implementation

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• Added QIFNeuron support

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Commits on Apr 3, 2024

• Starter Izhikevich commit

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Commits on Apr 4, 2024

• IF Neuron implementation

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• Add helper function

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• Izhikevich Neuron addition

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• Merge pull request #344 from Neuroblox/some-spectralDCM-tweaks

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Commits on Apr 5, 2024

• Updates per comments

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  agchesebro

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• Fix get_connection_rule

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• Merge pull request #346 from Neuroblox/updating_single_neurons

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• added TAN to GUI.jl

  helmutstrey

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• added QIFNeuron to GUI

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Commits on Apr 8, 2024

• prefixed kappa and epsilon with ln

  david-hofmann

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• Add MKL to Neuroblox. Fix in test datafitting.jl to ensure consistent sorting of values of initial conditions.

  david-hofmann

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• moved VL structs from Neuroblox.jl to spectralDCM.jl

  david-hofmann

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• added descriptions of elements of VL structs

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• removing the deprecated codebase

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• Merge pull request #347 from Neuroblox/sDCM_cleanup

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Commits on Apr 9, 2024

• Old neuron cleanup

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• Update components.jl

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Commits on Apr 15, 2024

• bump to MTK v9

  MasonProtter

  committed
  2a2ca69

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• some renames

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  cdb8edd

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• more fixes

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  94d8692

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• fix

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  33d3cf7

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• more fixes to reinforcement learning

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  committed
  853207c

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• deepcopy -> copy

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  5571a92

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• fix plasticity tests

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  f4a9e28

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• get datafitting tests working

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  25ef4cf

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• fix update to datafitting

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  6663a26

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• bump version

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  1a14479

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• improve type stability of spectralDCM code

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  64862bc

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• oops

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Commits on Apr 16, 2024

• Update IF/LIF

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• Reminder for IF connections

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• QIF updates

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Commits on Apr 19, 2024

• fixes for rebase

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• Merge branch 'mtk9' of github.com:Neuroblox/Neuroblox.jl into mtk9

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• Merge remote-tracking branch 'origin/cleanup-and-debug-nmm' into mtk9

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• oops, mark broken test

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• remove the .odesystem test

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Commits on Apr 27, 2024

• more states -> unknowns whack-a-mole

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