This repository contains code to analyze HCR confocal microscopy data.

Enivronment setup

1. Create a new environment

conda create -n mfish python=3.8
conda activate mfish

2. Install libraries

pip install scikit-image jupyterlab seaborn pandas numpy matplotlib scikit-learn scipy toml
pip install plotly
pip install cellpose
pip install napari[all]
pip install -e .

Contact

Polina Kosillo