getreads.py
Parse quality scores, add "lines" format.
Detect incomplete quality score lines.
Don't strip whitespace.
Allow empty sequences.
Add flexibility to "tsv" format.
alignview.py
Filter by quality score.
Add --cons-thres.
Add "msa" format.
trimmer.py
Add paired-end stats.
Set default --min-length to 1.
readsfq.c
Add fast FASTQ counting tool.