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treewide: fix use of
extraPkgs
in AppImages
Mostly removes unnecessary use of `extraPkgs = pkgs: appimageTools.defaultFhsEnvArgs.multiPkgs pkgs;` This caused some packages to be listed twice. Also, fix some styling, and accidental use of top-level packages (sometimes due to the `with;` keyword, e.g. on `beeper`).
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