Merge pull request #94 from gold2718/UpdateNoresmBranch

Summary: Update noresm_develop branch to cam6_3_123

Contributors: gold2718
Reviewers: oyvindseland
Purpose of changes: Aid in the implementation of the new Oslo chemistry and aerosol package by bring in relevant changes from ESCOMP/CAM
Github PR URL: #94
Changes made to build system: None
Changes made to the namelist: New defaults for (prototype) CAM7 and new options for Frierson gray radiation
Changes to the defaults for the boundary datasets: None
Substantial timing or memory changes: None
Almost all of these changes are changes made to ESCOMP/CAM between cam6_3_112 and cam6_3_123.  Below is a list of the files that differ from cam6_3_123
- .gitignore
    - Ignore HEMCO source
- Externals.cfg
- Externals_CAM.cfg
    - NorESM externals including CAM-Nor-phys
- bld/config_files/definition.xml
- bld/configure
    -  Changes for CAM-Nor-phys (NF compsts).
- bld/namelist_files/namelist_defaults_cam.xml
- bld/namelist_files/namelist_definition.xml
    - Addition of low-res compset data for testing
    - Conversion of input files to CDF5 format
- cime_config/config_component.xml
    - Configuration options for NF compsets
- cime_config/config_compsets.xml
    - Addition of NF compsets, remove incorrect `science_support` tags.
- cime_config/testdefs/testlist_cam.xml
    - NorESM-specific testlist including for NF compsets.
Tests:
- aux_cam: Every test had (expected) namelist and baseline changes but were otherwise fine
Issues addressed by this PR:
closes #88

.gitignore

@@ -13,6 +13,7 @@ src/physics/silhs
 src/physics/pumas
 src/physics/pumas-frozen
 src/dynamics/fv3/atmos_cubed_sphere
+src/hemco
 libraries/FMS
 libraries/mct
 libraries/parallelio

Externals.cfg

@@ -3,15 +3,15 @@
 #-----------------------------
 
 [parallelio]
-tag = pio2_5_10
 protocol = git
+tag = pio2_5_10
 repo_url = https://github.com/NCAR/ParallelIO
 local_path = libraries/parallelio
 required = True
 
 [mct]
-tag = MCT_2.11.0
 protocol = git
+tag = MCT_2.11.0
 repo_url = https://github.com/MCSclimate/MCT
 local_path = libraries/mct
 required = True
@@ -21,15 +21,15 @@ required = True
 #-----------------------------
 
 [ccs_config]
-tag = ccs_config_noresm0.0.13
 protocol = git
+tag = ccs_config_noresm0.0.14
 repo_url = https://github.com/NorESMhub/ccs_config_noresm.git
 local_path = ccs_config
 required = True
 
 [cime]
-tag = cime6.0.105_noresm_v2
 protocol = git
+tag = cime6.0.105_noresm_v4
 repo_url = https://github.com/NorESMhub/cime.git
 local_path = cime
 required = True
@@ -39,8 +39,8 @@ required = True
 #-----------------------------
 
 [share]
-tag = share1.0.17_noresm_v1
 protocol = git
+tag = share1.0.17_noresm_v1
 repo_url = https://github.com/NorESMHub/NorESM_share
 local_path = share
 required = True
@@ -50,24 +50,24 @@ required = True
 #-----------------------------
 
 [cice6]
-tag = cesm_cice6_4_1_7_noresm_v1
 protocol = git
+tag = cesm_cice6_4_1_7_noresm_v1
 repo_url = https://github.com/NorESMhub/NorESM_CICE
 local_path = components/cice
 externals = Externals.cfg
 required = True
 
 [cdeps]
-tag = cdeps1.0.10
 protocol = git
+tag = cdeps1.0.10
 repo_url = https://github.com/NorESMhub/CDEPS.git
 local_path = components/cdeps
 externals =  Externals_CDEPS.cfg
 required = True
 
 [cmeps]
-tag = cmeps0.14.32_noresm_v0
 protocol = git
+tag = cmeps0.14.32_noresm_v2
 repo_url = https://github.com/NorESMhub/CMEPS.git
 local_path = components/cmeps
 required = True
@@ -81,30 +81,30 @@ externals = Externals_CISM.cfg
 required = True
 
 [clm]
-tag = ctsm5.1.dev124-noresm_v1
 protocol = git
+tag = ctsm5.1dev130-noresm_v1
 repo_url = https://github.com/NorESMhub/CTSM
 local_path = components/clm
 externals = Externals_CLM.cfg
 required = True
 
 [mosart]
-tag = mosart1_0_48_noresm_v1
 protocol = git
+tag = mosart1_0_48_noresm_v1
 repo_url = https://github.com/NorESMhub/MOSART
 local_path = components/mosart
 required = True
 
 [rtm]
-tag = rtm1_0_78
 protocol = git
+tag = rtm1_0_78
 repo_url = https://github.com/ESCOMP/RTM
 local_path = components/rtm
 required = True
 
 [cam]
-local_path = .
 protocol = externals_only
+local_path = .
 externals = Externals_CAM.cfg
 required = True
 

Externals_CAM.cfg

@@ -1,72 +1,80 @@
 [chem_proc]
-local_path = chem_proc
 protocol = git
-repo_url = https://github.com/ESCOMP/CHEM_PREPROCESSOR.git
 tag = chem_proc5_0_05
+repo_url = https://github.com/ESCOMP/CHEM_PREPROCESSOR.git
+local_path = chem_proc
 required = True
 
 [carma]
-local_path = src/physics/carma/base
 protocol = git
-repo_url = https://github.com/ESCOMP/CARMA_base.git
 tag = carma4_00
+repo_url = https://github.com/ESCOMP/CARMA_base.git
+local_path = src/physics/carma/base
 required = True
 
 [cosp2]
-local_path = src/physics/cosp2/src
 protocol = svn
-repo_url = https://github.com/CFMIP/COSPv2.0/tags/
 tag = v2.1.4cesm/src
+repo_url = https://github.com/CFMIP/COSPv2.0/tags/
+local_path = src/physics/cosp2/src
 required = True
 
 [clubb]
-local_path = src/physics/clubb
 protocol = svn
-repo_url = https://github.com/larson-group/clubb_release/tags/
 tag = clubb_4ncar_20221129_59cb19f_20230330_branchtag/src/CLUBB_core
+repo_url = https://github.com/larson-group/clubb_release/tags/
+local_path = src/physics/clubb
 required = True
 
 [silhs]
-local_path = src/physics/silhs
 protocol = svn
-repo_url = https://github.com/larson-group/clubb_release/tags/
 tag = clubb_4ncar_20221129_59cb19f_20230330_branchtag/src/SILHS
+repo_url = https://github.com/larson-group/clubb_release/tags/
+local_path = src/physics/silhs
 required = True
 
 [pumas]
-local_path = src/physics/pumas
 protocol = git
-repo_url = https://github.com/ESCOMP/PUMAS
 tag = pumas_cam-release_v1.29
+repo_url = https://github.com/ESCOMP/PUMAS
+local_path = src/physics/pumas
 required = True
 
 [pumas-frozen]
-local_path = src/physics/pumas-frozen
 protocol = git
-repo_url = https://github.com/ESCOMP/PUMAS
 tag = pumas_cam-release_v1.17_rename
+repo_url = https://github.com/ESCOMP/PUMAS
+local_path = src/physics/pumas-frozen
 required = True
 
 [ali_arms]
-local_path = src/physics/ali_arms
 protocol = git
+tag = ALI_ARMS_v1.0.1
 repo_url = https://github.com/ESCOMP/ALI-ARMS
-tag = ALI_ARMS_v1.0.0
+local_path = src/physics/ali_arms
 required = True
 
 [atmos_phys]
-tag = atmos_phys0_00_011
 protocol = git
+tag = atmos_phys0_00_011
 repo_url = https://github.com/NCAR/atmospheric_physics
-required = True
 local_path = src/atmos_phys
+required = True
 
 [camnor_phys]
-tag = camnor_noresm_v0.0.1
 protocol = git
+tag = camnor_noresm_v0.0.3
 repo_url = https://github.com/NorESMhub/CAM-Nor-physics
-required = True
 local_path = src/physics/camnor_phys
+required = True
+
+[hemco]
+protocol = git
+tag = hemco-cesm1_2_0_hemco3_6_2_cesm
+repo_url = https://github.com/ESCOMP/HEMCO_CESM.git
+local_path = src/hemco
+required = True
+externals = Externals_HCO.cfg
 
 [externals_description]
-schema_version = 1.0.0
+schema_version = 1.0.01