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Changes to buildnml to permit use of new dglc component with ctms #71
Commits on Nov 28, 2023
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Add an LII test using the spunup 1850 ne30pg3_g17 file
(cherry picked from commit d6994f7)
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Adjust tests with tests expected to pass
(cherry picked from commit 9882289)
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Merge pull request ESCOMP#2240 from samsrabin/use-basetlatvary-params
Use baset_latvary parameters Namelist parameters baset_latvary_slope and baset_latvary_intercept were never actually used, with values of 0.4 and 12 being hard-coded in the relevant subroutine instead. This PR fixes that, and also adds unit testing of a refactored function that uses them.
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(cherry picked from commit a4eff78) Conflicts: bld/namelist_files/namelist_defaults_ctsm.xml
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Add issue number to expected fails
(cherry picked from commit 4e09130) Conflicts: cime_config/testdefs/ExpectedTestFails.xml
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Update baseline directory for Derecho
(cherry picked from commit b916d38)
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Change queue and wallclock limit for Derecho
(cherry picked from commit 863ed22)
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Add 2000 and HIST tests for ne30np4.pg3 to cesm3_dev testlist, remove…
… the PEM test that is no longer needed and doesn't have a testmod for it (cherry picked from commit 04853a8)
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Get finidat file working for 2000 ne30np4.pg3 clm5_1_cam6.0 working
(cherry picked from commit 88ac3ae)
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Update ne30np4.pg3 1850 finidat file so LII tests work, and add in ne…
…30np4.pg3 landuse.timeseries file (cherry picked from commit d3a82a5) Conflicts: bld/namelist_files/namelist_defaults_ctsm.xml
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(cherry picked from commit 1a09d07) Conflicts: cime_config/testdefs/testmods_dirs/clm/ciso_decStartNoMeier/user_nl_clm
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Merge tag 'ctsm5.1.dev155' into derecho1
Use baset_latvary parameters Namelist parameters baset_latvary_slope and baset_latvary_intercept were never actually used, with values of 0.4 and 12 being hard-coded in the relevant subroutine instead. This PR fixes that, and also adds unit testing of a refactored function that uses them.
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The ne30pg3 finidat file needs to do interpolation to get started sin…
…ce it was created with ctsm5.2 datasets
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adrifoster committed
Nov 28, 2023 Configuration menu - View commit details
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Remove the ne30pg3 LII tests because they will fail as use_init_inter…
…p is required because the finidat file is based on ctsm5.2 datasets
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Add use_init_interp to the ne30pg3 finidat file, because it's needed …
…for non ctsm5.2 surface datasets
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Commits on Nov 29, 2023
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Merge tag 'ctsm5.1.dev155' into fates-luh2
Use baset_latvary parameters Namelist parameters baset_latvary_slope and baset_latvary_intercept were never actually used, with values of 0.4 and 12 being hard-coded in the relevant subroutine instead. This PR fixes that, and also adds unit testing of a refactored function that uses them.
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Commits on Nov 30, 2023
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First pass at adding derecho tests, also change the syntax for ones w…
…ith options per machine to options after machine lists, and add intel-oneapi and nvhpc tests to test lists with clm_short
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Merge pull request ESCOMP#2273 from samsrabin/disable-meier-roughness
Do not use Meier roughness by default, even with 5.1 ctsm5.1.dev155 had turned on Meier2022 surface roughness calculation by default for 5.1 compsets. Several bugs have recently emerged that were not caught by pre-merge testing, so this tag reverts that change. Thus, the ZengWang2007 method is default for all compsets again.
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Commits on Dec 1, 2023
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Fix pe-layouts for Derecho, remove new nvhpc tests on Derecho that we…
…ren't in Cheyenne, and remove the intel-oneapi tests since they fail
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Merge tag 'ctsm5.1.dev156' into derecho1
Do not use Meier roughness by default, even with 5.1 ctsm5.1.dev155 had turned on Meier2022 surface roughness calculation by default for 5.1 compsets. Several bugs have recently emerged that were not caught by pre-merge testing, so this tag reverts that change. Thus, the ZengWang2007 method is default for all compsets again.
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Remove two nvhpc tests that fail, one from Cheyenne that wasn't there…
… before and the other from Derecho
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Commits on Dec 2, 2023
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Commits on Dec 3, 2023
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Commits on Dec 4, 2023
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Remove references to Cheyenne and make it more explicit what to do on…
… different systems, as well as adding Derecho
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First stab at getting the test/tools framework to work on Derecho, is…
…n't working as conda and module is not available in my default shell
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Merge tag 'ctsm5.1.dev156' into externals-for-derecho
Do not use Meier roughness by default, even with 5.1 ctsm5.1.dev155 had turned on Meier2022 surface roughness calculation by default for 5.1 compsets. Several bugs have recently emerged that were not caught by pre-merge testing, so this tag reverts that change. Thus, the ZengWang2007 method is default for all compsets again.
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Commits on Dec 5, 2023
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Merge pull request ESCOMP#2270 from samsrabin/externals-for-derecho
Update Externals.cfg to work on Derecho
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Merge tag 'ctsm5.1.dev157' into derecho1
Update Externals.cfg to work on Derecho
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Commits on Dec 6, 2023
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Merge tag 'ctsm5.1.dev155' into bugfix_iss2264
Use baset_latvary parameters Namelist parameters baset_latvary_slope and baset_latvary_intercept were never actually used, with values of 0.4 and 12 being hard-coded in the relevant subroutine instead. This PR fixes that, and also adds unit testing of a refactored function that uses them.
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Restore perl CLMBuildNamelist back to ctsm5.1.dev157 version, the ne3…
…0np4.pg3 work around isn't needed, this fixes ESCOMP#2268
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Point to the file location under /glade/campaign/cisl/dares/glade-p-d…
…ares-Oct2023 which resolves ESCOMP#2282
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Commits on Dec 7, 2023
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Update paths in comments from /glade/p to new location where @olyson …
…put these files
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Correct the finidat file settings for clm5_1_cam6 to point to the clm…
…5_0_cam6 f09 files
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Commits on Dec 8, 2023
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Merge remote-tracking branch 'adrifoster/run_neon-cime_path_bug' into…
… subset_data_fix Resolved conflicts: python/ctsm/site_and_regional/run_neon.py
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Merge pull request ESCOMP#2269 from ekluzek/derecho1
First tag with PE layouts and testing for Derecho
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Merge remote-tracking branch 'escomp/master' into subset_data_fix
Resolved conflicts: .git-blame-ignore-revs
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This reverts commit bb536ed. First of 3 expected reverts.
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Revert "Add module load cdo to regrid_ggcmi_shdates.py for sys test t…
…o pass" This reverts commit ff02bad. Second of 3 expected reverts.
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Revert "Merge remote-tracking branch 'samsrabin/regrid-shdate-dev' in…
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Commits on Dec 9, 2023
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Commits on Dec 12, 2023
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Merge pull request ESCOMP#2253 from slevis-lmwg/subset_data_fix
Various BFB fixes and updates.
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Commits on Dec 13, 2023
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Merge tag 'ctsm5.1.dev159' into fates-luh2
Various BFB fixes and updates Purpose/description of changes ------------------------------ the default comes in a later tag (slevis) Regular and python testing passed. Does not change answers relative to dev158.
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Commits on Dec 14, 2023
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Revert "Revert "Merge remote-tracking branch 'samsrabin/regrid-shdate…
…-dev' into subset_data_fix"" This reverts commit a059445.
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Rename TestRegridGgcmiShdates to TestUtilsImportCoord.
Similarly rename its file.
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Commits on Dec 15, 2023
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Update the default fates paramfile
A newer parameter file was generated that reduces the maximum number of fates patches for the default configuration. This avoids misalignment between the default surface datasets.
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Pass surfpft bounds as input argumment
The wt_nat_patch array is allocated using surfpft bounds. While surfpft and natpft will typically match, this isn't the case for fates currently. As such the nag compiler will complain if the input array has lower bounds for its dimensions than the dummy argument bounds.
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Commits on Dec 17, 2023
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chdir out of tempdir in tests and regrid_ggcmi_shdates.
Resolves ESCOMP#2167. Affected scripts: * test_sys_mesh_modifier * test_sys_run_neon * regrid_ggcmi_shdates
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Commits on Dec 18, 2023
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Merge tag 'ctsm5.1.dev159' into cropresidues3-dev
Various BFB fixes and updates Purpose/description of changes ------------------------------ the default comes in a later tag (slevis) Regular and python testing passed. Does not change answers relative to dev158.
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Merge tag 'ctsm5.1.dev159' into tillage
Various BFB fixes and updates Purpose/description of changes ------------------------------ the default comes in a later tag (slevis) Regular and python testing passed. Does not change answers relative to dev158.
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Only get a default luh timeseries file if you need one, and ask for o…
…ne at the model resolution and sim_year_range
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LUH file should be for 1850-2000, and add a case for constant until i…
…ssue ESCOMP#2304 is resolved
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Merge pull request ESCOMP#2076 from glemieux/fates-luh2
Add FATES land use change module to pass LUH2 data to FATES
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Merge tag 'ctsm5.1.dev160' into refactor-crop-gdd-runmeans
FATES landuse version 1 This tag enables FATES to utilize the state and transitions data from the Land Use Harmonization (https://luh.umd.edu/) data sets. This data has been preprocessed using tooling provided by FATES via a separate pull request (FATES#1032). A new module has been added to the dyn_subgrid directory that largely adapts the dynHarvest module to import and read this minimially processed data, which is data is passed to fates.
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Merge pull request ESCOMP#2060 from samsrabin/refactor-crop-gdd-runmeans
Refactor 20-year running means of crop GDD accumulation Three variables track the 20-year running mean of GDD accumulation (base temperatures 0, 8, and 10°C) during the "growing season" (April through September in the Northern Hemisphere, October through March in the Southern Hemisphere). This update refactors those to use accumulMod, resolving overly-strong weighting of the first few years after a crop becomes active.
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Merge tag 'ctsm5.1.dev161' into regrid-shdate-dev2
Refactor 20-year running means of crop GDD accumulation Three variables track the 20-year running mean of GDD accumulation (base temperatures 0, 8, and 10°C) during the "growing season" (April through September in the Northern Hemisphere, October through March in the Southern Hemisphere). This update refactors those to use accumulMod, resolving overly-strong weighting of the first few years after a crop becomes active.
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Merge pull request ESCOMP#2292 from samsrabin/regrid-shdate-dev2
Improvements to processing of crop calendar files (v2) In python/ctsm/crop_calendars/, process_ggcmi_shdates.py and regrid_ggcmi_shdates.py are used to convert the raw GGCMI crop calendar files into CTSM-compatible versions. This update fixes some bugs, removes dependencies on the nco utilities, enables the use of surface datasets as template files (in addition to the existing ability to use CTSM output files), and standardizes things for consistency with other CTSM Python tools.
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Merge tag 'ctsm5.1.dev162' into cropresidues3
Improvements to processing of crop calendar files In python/ctsm/crop_calendars/, process_ggcmi_shdates.py and regrid_ggcmi_shdates.py are used to convert the raw GGCMI crop calendar files into CTSM-compatible versions. This update fixes some bugs, removes dependencies on the nco utilities, enables the use of surface datasets as template files (in addition to the existing ability to use CTSM output files), and standardizes things for consistency with other CTSM Python tools.
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Add NEON tests to expected fail list.
See ESCOMP#2310: NEON tests sometimes fail (ESCOMP#2310)
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NEON tests can also fail during RUN.
See ESCOMP#2310: NEON tests sometimes fail (ESCOMP#2310)
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Enable tillage in two aux_clm tests.
(cherry picked from commit 142c2c1)
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Merge branch 'tillage' into tillage-and-residues4
Makes no changes, but I realized the cherry-pick I did before won't let Github recognize that this is up-to-date with the tillage branch.
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Merge pull request ESCOMP#2311 from samsrabin/tillage-and-residues4
Adds capability for cropland soil tillage and post-harvest residue removal. Tillage: This PR brings in the tillage code written by Sam Levis and Michael Graham and used in Graham et al. (2021, ERL, doi:10.1088/1748-9326/abe6c6). Low- and high-intensity tillage here work by increasing the decomposition rate of different soil carbon pools. These "decomposition multipliers" vary based on soil pool and how long it's been since the crop was planted; they are set with new paramfile variables till_decompk_multipliers and mimics_till_decompk_multipliers. Note that tillage is off by default. Residue removal: Adds a parameter hat represents what fraction of post-harvest crop residues (stems and leaves) should be removed to the crop product pool rather than being transferred to litter.
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Merge tag 'ctsm5.1.dev163' into fates-two-stream-dev163
Adds capability for cropland soil tillage and post-harvest residue removal. Tillage: This PR brings in the tillage code written by Sam Levis and Michael Graham and used in Graham et al. (2021, ERL, doi:10.1088/1748-9326/abe6c6). Low- and high-intensity tillage here work by increasing the decomposition rate of different soil carbon pools. These "decomposition multipliers" vary based on soil pool and how long it's been since the crop was planted; they are set with new paramfile variables till_decompk_multipliers and mimics_till_decompk_multipliers. Note that tillage is off by default. Residue removal: Adds a parameter hat represents what fraction of post-harvest crop residues (stems and leaves) should be removed to the crop product pool rather than being transferred to litter.
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Merge pull request ESCOMP#2265 from rgknox/fates-two-stream
Fates two stream API
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Merge pull request ESCOMP#2323 from slevis-lmwg/merge_tag_meier_and_p…
…r2212 Merge tag: Turn on Meier2022, tillage, residue removal; bring in ESCOMP#2212
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Merge remote-tracking branch 'TeaganKing/new_refactoring' into bfb_me…
…rge_tag_2315_et_al
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Merge remote-tracking branch 'adrifoster/interpMonthlyVeg_helper_func…
…tion' into bfb_merge_tag_2315_et_al slevis resolved conflicts: src/main/clm_driver.F90
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Merge remote-tracking branch 'samsrabin/check-pyenv-FatesColdTwoStrea…
…m' into bfb_merge_tag_2315_et_al
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Merge remote-tracking branch 'samsrabin/funit-test-izumi' into bfb_me…
…rge_tag_2315_et_al
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Merge remote-tracking branch 'escomp/auto-high-priority' into bfb_mer…
…ge_tag_2315_et_al
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Revert "Merge remote-tracking branch 'adrifoster/interpMonthlyVeg_hel…
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Merge pull request ESCOMP#2334 from slevis-lmwg/bfb_merge_tag_2315_et_al
Bfb merge tag dev166
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Merge pull request ESCOMP#2342 from ESCOMP/fix-auto-assign
Fix "Assign to project" Github action.
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Merge pull request ESCOMP#2350 from samsrabin/fix-paramfile-format
Delete history and spurious _FillValue from parameter files
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put in changes needed for addition of new dglc component
Mariana Vertenstein committedApr 1, 2024 Configuration menu - View commit details
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