n1850.ne30_tn14.hybrid_fatessp.20240906

[mvertens]

Purpose:
Exactly like n1850.ne30_tn14.hybrid.20240829

• use of CLM51%FATES-SP instead of CLM51%SP
• NOTE: a memory leak is present in the run and hits agains the node limit when running past 11 years.
  See memory leak in n1850 case NorESM#550
• NOTE: the goal is to run 20 years. When that is done - the code will be moved to /nird/datalake.

---

Description:

• create_newcase commnad
  ./create_newcase --case /cluster/projects/nn9560k/<username>/cases/n1850.ne30_tn14.hybrid.20240906 --compset 1850_CAM%DEV%LT%NORESM%CAMoslo_CLM51%FATES-SP_CICE_BLOM%ECO_MOSART_DGLC%NOEVOLVE_SWAV_SESP --res ne30pg3_tn14 --project <project> --run-unsupported

• user_nl_cam

 use_aerocom = .true.
 interpolate_nlat   = 192
 interpolate_nlon   = 288
 interpolate_output = .true.
 history_aerosol = .true. 
 zmconv_c0_lnd  =  0.0075D0
 zmconv_c0_ocn  =  0.0300D0
 zmconv_ke =  5.0E-6
 zmconv_ke_lnd =  1.0E-5
 clim_modal_aero_top_press =  1.D-4
 bndtvg = '/cluster/shared/noresm/inputdata/atm/cam/ggas/noaamisc.r8.nc'

• user_nl_blom
  ICFILE = "/cluster/shared/noresm/inputdata/restart/NOIIAJRAOC20TR_TL319_tn14_ppm_20240816/rest/1775-01-01-00000/NOIIAJRAOC20TR_TL319_tn14_ppm_20240816.blom.r.1775-01-01-00000.nc"

• user_nl_cice
  ice_ic = "/cluster/shared/noresm/inputdata/restart/NOIIAJRAOC20TR_TL319_tn14_ppm_20240816/rest/1775-01-01-00000/NOIIAJRAOC20TR_TL319_tn14_ppm_20240816.cice.r.1775-01-01-00000.nc"

• user_nl_clm

  • finidat = '/cluster/work/users/masan/archive/1850_fates_spinup/1850_fates_spinup.clm2.r.0081-01-01-00000.nc' @maritsandstad - do we still want this finidat?
  • fates_paramfile = '/cluster/shared/noresm/inputdata/lnd/clm2/paramdata/fates_params_api.35.0.0_12pft_c240326.nc' @rosiealice - do we still want this?
  • The following automatically gets produced when you use CLM51%FATES-SP in the compset name. @rosiealice - should we add anything?

use_fates_sp = .true.
! Some settings that will be set when FATES-SP mode is turned on
soil_decomp_method = 'None'
use_lch4 = .false.
fates_spitfire_mode = 0
use_fates_fixed_biogeog = .true.
use_fates_nocomp = .true.
hist_ndens = 1
! Turn off a list of fields that are not needed for FATES-SP mode
hist_fexcl1 = 'FATES_TRIMMING', 'FATES_COLD_STATUS', 'FATES_GDD', 'FATES_NCHILLDAYS',
              'FATES_NCOLDDAYS', 'FATES_DAYSINCE_COLDLEAFOFF', 'FATES_DAYSINCE_COLDLEAFON',
              'FATES_CANOPY_SPREAD', 'FATES_VEGC_PF',
              'FATES_STOREC_PF', 'FATES_RECRUITMENT_PF', 'FATES_MORTALITY_PF', 'FATES_PATCHAREA_AP', 'FATES_LAI_AP',
              'FATES_CANOPYAREA_AP', 'FATES_NESTEROV_INDEX', 'FATES_IGNITIONS', 'FATES_FDI', 'FATES_ROS', 'FATES_EFFECT_WSPEED',
              'FATES_FUELCONSUMED', 'FATES_FIRE_INTENSITY', 'FATES_FIRE_INTENSITY_BURNFRAC', 'FATES_BURNFRAC', 'FATES_FUEL_MEF',
              'FATES_FUEL_BULKD', 'FATES_FUEL_EFF_MOIST', 'FATES_FUEL_SAV', 'FATES_FUEL_AMOUNT', 'FATES_FRAGMENTATION_SCALER_SL',
              'FATES_FUEL_MOISTURE_FC', 'FATES_FUEL_AMOUNT_FC', 'FATES_BURNFRAC_AP', 'FATES_FIRE_INTENSITY_BURNFRAC_AP',
              'FATES_FUEL_AMOUNT_AP', 'FATES_FUEL_BURNT_BURNFRAC_FC', 'FATES_LITTER_IN', 'FATES_LITTER_OUT', 'FATES_SEED_BANK',
              'FATES_SEEDS_IN', 'FATES_LITTER_IN_EL', 'FATES_LITTER_OUT_EL', 'FATES_SEED_BANK_EL', 'FATES_SEEDS_IN_LOCAL_EL',
              'FATES_SEEDS_IN_EXTERN_EL', 'FATES_SEED_GERM_EL', 'FATES_SEED_DECAY_EL', 'FATES_STOREC', 'FATES_VEGC',
              'FATES_SAPWOODC', 'FATES_FROOTC', 'FATES_REPROC', 'FATES_STRUCTC', 'FATES_NONSTRUCTC',
              'FATES_VEGC_ABOVEGROUND', 'FATES_CANOPY_VEGC', 'FATES_USTORY_VEGC', 'FATES_PRIMARY_PATCHFUSION_ERR',
              'FATES_DISTURBANCE_RATE_FIRE', 'FATES_DISTURBANCE_RATE_LOGGING', 'FATES_DISTURBANCE_RATE_TREEFALL',
              'FATES_HARVEST_CARBON_FLUX', 'FATES_GPP_CANOPY', 'FATES_AUTORESP_CANOPY',
              'FATES_GPP_USTORY', 'FATES_AUTORESP_USTORY', 'FATES_CROWNAREA_CL', 'FATES_DEMOTION_CARBONFLUX',
              'FATES_PROMOTION_CARBONFLUX', 'FATES_MORTALITY_CFLUX_CANOPY', 'FATES_MORTALITY_CFLUX_USTORY',
              'FATES_DDBH_CANOPY_SZ', 'FATES_DDBH_USTORY_SZ', 'FATES_BASALAREA_SZ',
              'FATES_VEGC_ABOVEGROUND_SZ', 'FATES_LAI_CANOPY_SZ', 'FATES_MORTALITY_CANOPY_SZ', 'FATES_NPLANT_USTORY_SZ',
              'FATES_LAI_USTORY_SZ', 'FATES_NPLANT_SZ', 'FATES_NPLANT_AC', 'FATES_MORTALITY_BACKGROUND_SZ',
              'FATES_MORTALITY_HYDRAULIC_SZ', 'FATES_MORTALITY_CSTARV_SZ', 'FATES_MORTALITY_IMPACT_SZ',
              'FATES_MORTALITY_FIRE_SZ', 'FATES_MORTALITY_TERMINATION_SZ', 'FATES_MORTALITY_LOGGING_SZ',
              'FATES_MORTALITY_FREEZING_SZ', 'FATES_MORTALITY_SENESCENCE_SZ', 'FATES_MORTALITY_AGESCEN_SZ',
              'FATES_MORTALITY_AGESCEN_AC', 'FATES_MORTALITY_USTORY_SZ', 'FATES_FROOTMAINTAR', 'FATES_CROOTMAINTAR',
              'FATES_LSTEMMAINTAR', 'FATES_NEP', 'FATES_HET_RESP', 'FATES_FIRE_CLOSS', 'FATES_FIRE_FLUX_EL',
              'FATES_LITTER_AG_FINE_EL', 'FATES_LITTER_BG_FINE_EL', 'FATES_LITTER_BG_CWD_EL', 'FATES_LITTER_AG_CWD_EL',
              'FATES_LITTER_CWD_ELDC', 'FATES_LEAF_ALLOC', 'FATES_SEED_ALLOC', 'FATES_STEM_ALLOC', 'FATES_FROOT_ALLOC',
              'FATES_CROOT_ALLOC', 'FATES_STORE_ALLOC', 'FATES_AUTORESP', 'FATES_GROWTH_RESP',
              'FATES_LEAFMAINTAR', 'FATES_MAINT_RESP', 'FATES_NPP', 'FATES_NPP_PF'

• xmlchange commands

./xmlchange NTASKS=1920
./xmlchange NTASKS_OCN=256
./xmlchange ROOTPE=0
./xmlchange ROOTPE_OCN=1920
./xmlchange BLOM_VCOORD=cntiso_hybrid,BLOM_TURBULENT_CLOSURE=
./xmlchange STOP_OPTION=nyears
./xmlchange STOP_N=7
./xmlchange REST_N=1
./xmlchange REST_OPTION=nyears
./xmlchange RESUBMIT=3
./xmlchange --subgroup case.run JOB_WALLCLOCK_TIME=48:00:00
./xmlchange --subgroup case.st_archive JOB_WALLCLOCK_TIME=03:00:00

---

Compset long name
1850_CAM%DEV%LT%NORESM%CAMoslo_CLM51%FATESSP_CICE_BLOM%ECO_MOSART_DGLC%NOEVOLVE_SWAV_SESP

---

Model grid long name
a%ne30np4.pg3_l%ne30pg4.pg3_oi%tnx1v4_r%r05_w%null_z%null_g%gris4_m%tnx1v4
Case directory:

• Locally on betzy:
• On github: TODO

---

Code version on github:

• https://github.com/NorESMhub/NorESM/releases/tag/noresm2_5_alpha05

---

Diagnostics:

---

Output:

• Raw output: will be put on /nird/datalake/NS9560K/noresm3/cases/ n1850.ne30_tn14.hybrid.20240906 (not there yet)
• CAM Climos: TODO

---

Contacts:
@monsieuralok , @adagj

---

Extra details:

[maritsandstad]

Happy to do a new spinup if we want better parameters or other changes to setup, but maybe it's best to just get things running for now?

[adagj]

@mvertens Hi Mariana,
where is this case stored on Betzy?

[oyvindseland]

Strange. In the notifications e-mail the case path is given but not on github
I found it in the create_newcase command though
/cluster/projects/nn9560k/mvertens/cases/n1850.ne30_tn14.hybrid.20240829

[monsieuralok]

@adagj @oyvindseland I am running this experiment with FATES.

[rosiealice]

Thanks @monsieuralok :)

[monsieuralok]

@maritsandstad @rosiealice @mvertens @oyvindseland is there any diagnostic package on nird for NorESM2.5 ?

[oyvindseland]

There are no integrated packages anymore although I think Yanchun is updating his script using the new CAM diagnostics based on
https://github.com/NorESMhub/ADF At the moment the numbers of users since if all users set up their own CONDA environment the number of files would be problematic for the system.

[mvertens]

Sorry for not responding sooner - I just got back early this morning. I have 15 years stores in /nird/datalake/NS9569K/noresm3/cases/n1850.ne30_tn14.hybrid.20240829. This has the oslo-aero fix but not the fix to the surface dataset that was found.

[adagj]

I'm running the diagnostics for n1850.ne30_tn14.hybrid.20240829, but where can I find the n1850.ne30_tn14.hybrid_fatessp.20240906 simulation?

@monsieuralok

[monsieuralok]

I'm running the diagnostics for n1850.ne30_tn14.hybrid.20240829, but where can I find the n1850.ne30_tn14.hybrid_fatessp.20240906 simulation?

@monsieuralok

@adagj Here is 20 years simulation :- /nird/datalake/NS9560K/noresm/cases/n1850.ne30_tn14.hybrid.20240910-fates on nird ; regarding fates you can discuss with @mvertens @rosiealice probably, something was missing in implementation or configuration;

[adagj]

I'm running the diagnostics for n1850.ne30_tn14.hybrid.20240829, but where can I find the n1850.ne30_tn14.hybrid_fatessp.20240906 simulation?
@monsieuralok

@adagj Here is 20 years simulation :- /nird/datalake/NS9560K/noresm/cases/n1850.ne30_tn14.hybrid.20240910-fates on nird ; regarding fates you can discuss with @mvertens @rosiealice probably, something was missing in implementation or configuration;

@monsieuralok Hi Alok. Can you please save the simulations in /nird/datalake/NS9560K/noresm3/cases/ with the rest of the noresm2.5 development simulations? (noresm3 instead of noresm)

[monsieuralok]

@mvertens can you provide write permission to following directory on nird:- /nird/datalake/NS9560K/noresm3

[mvertens]

@monsieuralok - you should now have access to /nird/datalake/NS9560K/noresm3

[monsieuralok]

@monsieuralok - you should now have access to /nird/datalake/NS9560K/noresm3

@mvertens I also need write permission for /nird/datalake/NS9560K/noresm3/cases
sorry about that not mentioning full path

[mvertens]

@monsieuralok - you should now have permissions for /nird/datalake/NS9560K/noresm3/cases