Create interactivetool_genenotebook.xml (usegalaxy-eu#201)

NordicESMhub · Oct 30, 2023 · fc89abf · fc89abf
1 parent b133b9f
commit fc89abf
Showing 1 changed file with 40 additions and 0 deletions.
diff --git a/tools/interactive/interactivetool_genenotebook.xml b/tools/interactive/interactivetool_genenotebook.xml
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+<tool id="interactive_tool_genenotebook" tool_type="interactive" name="GeneNoteBook" version="0.4.3" profile="22.01">
+    <description>viewer</description>
+    <requirements>
+        <container type="docker">quay.io/biocontainers/genoboo:0.4.3--h9f5acd7_0</container>
+    </requirements>
+    <entry_points>
+        <entry_point name="GeneNoteBook Interactive Tool" requires_domain="True">
+            <port>3000</port>
+            <url>/</url>
+        </entry_point>
+    </entry_points>
+    <command><![CDATA[
+        tar -xf '${input}' mongo_db
+
+        &&
+
+        ln -s mongo_db data
+
+        &&
+
+        genoboo run -d ./
+    ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="genenotebook" label="GeneNoteBook dataset" help="Produced with the 'Build a GeneNoteBook' tool"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="txt" />
+    </outputs>
+    <tests>
+    </tests>
+    <help><![CDATA[
+        Run a GeneNoteBook displaying the content of GeneNoteBook dataset generated by the "Build a GeneNoteBook" tool.
+
+        The current version is based on a forked version of GeneNoteBook including several various improvements (https://github.com/gogepp/genoboo/).
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btz491</citation>
+    </citations>
+</tool>