Merge branch 'master' into zhengj2007-patch-5

.github/ISSUE_TEMPLATE/new-ontology.yml

@@ -268,7 +268,7 @@ body:
           required: false
         - label: My term labels are in English and conform to the OBO Foundry [Naming Conventions](http://obofoundry.org/http://obofoundry.org/principles/fp-012-naming-conventions.html)
           required: false
-        - label: I understand that term definitions, while not mandatory, are key to understanding the intentions of a term especially when the ontology is used in curation. I made sure that a reasonable majority of terms in my ontology have definitions, in English, using the [IAO:0000115](https://ontobee.org/ontology/IAO?iri=http://purl.obolibrary.org/obo/IAO_0000115) property.
+        - label: I understand that term definitions are key to understanding the intentions of a term, especially when the ontology is used in curation. I made sure that a reasonable majority of terms in my ontology--and all top level terms--have definitions, in English, using the [IAO:0000115](https://ontobee.org/ontology/IAO?iri=http://purl.obolibrary.org/obo/IAO_0000115) property.
           required: false
         - label: For every term in my ontology, I checked whether another OBO Foundry ontology has one with the same meaning. If so, I re-used that term directly (not by cross-reference, by directly using the IRI).
           required: false

ontology/eupath.md

@@ -3,7 +3,7 @@ layout: ontology_detail
 id: eupath
 title: VEuPathDB ontology
 contact:
-  email: [email protected].edu
+  email: [email protected].edu
   github: zhengj2007
   label: Jie Zheng
   orcid: 0000-0002-2999-0103
@@ -37,7 +37,7 @@ usages:
 - description: The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology platform for integrating, mining and analyzing microbiome experiments.
   type: annotation and query
   user: https://microbiomedb.org
-activity_status: active
+activity_status: inactive
 ---
 
 The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.

ontology/iao.md

@@ -6,7 +6,7 @@ build:
   method: owl2obo
   source_url: http://purl.obolibrary.org/obo/iao.owl
 contact:
-  email: [email protected]
+  email: [email protected]
   github: zhengj2007
   label: Jie Zheng
   orcid: 0000-0002-2999-0103