Merge branch 'master' into ddooley-patch-1

_config.yml

@@ -3396,6 +3396,15 @@ ontologies:
   - medical
   title: Medical Action Ontology
   tracker: https://github.com/monarch-initiative/MAxO/issues
+  usages:
+  - description: MAxO is used to capture disease-treatment relations from the scientific
+      literature.
+    examples:
+    - description: Bardet-biedl Syndrome 1 (MONDO:0008854) is treated through dietary
+        interventions (MAXO:0000088) according to Forsyth et al 2003 (PMID:20301537)
+      url: https://hpo.jax.org/data/annotations
+    type: annotation
+    user: https://hpo.jax.org/
 - activity_status: active
   contact:
     email: [email protected]
@@ -3872,7 +3881,7 @@ ontologies:
     title: Monarch Phenotype Page
     url: http://monarchinitiative.org/phenotype/MP:0000001
   contact:
-    email: [email protected]
+    email: [email protected]
     github: sbello
     label: Sue Bello
     orcid: 0000-0003-4606-0597
@@ -6252,10 +6261,10 @@ ontologies:
   tracker: https://github.com/obophenotype/spider-ontology/issues
 - activity_status: active
   contact:
-    email: alejandra.gonzalez.beltran@gmail.com
-    github: agbeltran
-    label: Alejandra Gonzalez-Beltran
-    orcid: 0000-0003-3499-8262
+    email: proccaserra@gmail.com
+    github: proccaserra
+    label: Philippe Rocca-Serra
+    orcid: 0000-0001-9853-5668
   depicted_by: https://raw.githubusercontent.com/ISA-tools/stato/dev/images/stato-logo-3.png
   description: STATO is a general-purpose STATistics Ontology. Its aim is to provide
     coverage for processes such as statistical tests, their conditions of application,

_data/operations.yml

@@ -372,3 +372,13 @@ members:
   name: Vinícius de Souza
   orcid: 0000-0003-3961-0247
   wikidata: Q125502774
+- affiliation:
+    name: SciBite
+    ror: 055j8ya05
+  country: UK
+  github: janelomax
+  groups:
+  - outreach
+  name: Jane Lomax
+  orcid: 0000-0001-8865-4321
+  wikidata: Q20746117

assets/js/custom.js

@@ -102,7 +102,7 @@ jQuery(document).ready(function() {
                             </th>
                             <th scope="col">
                                 <span class="sort-button" title="Sort by status" data-sort="license" >
-                                    Re-Use <i class="bi-chevron-up" aria-hidden="true"></i>
+                                    OBO Principles <i class="bi-chevron-up" aria-hidden="true"></i>
                                 </span>
                             </th>
                             <th scope="col">

ontology/maxo.md

@@ -46,5 +46,12 @@ repository: https://github.com/monarch-initiative/MAxO
 tags:
 - medical
 tracker: https://github.com/monarch-initiative/MAxO/issues
+usages:
+- description: MAxO is used to capture disease-treatment relations from the scientific literature.
+  examples:
+  - description: Bardet-biedl Syndrome 1 (MONDO:0008854) is treated through dietary interventions (MAXO:0000088) according to Forsyth et al 2003 (PMID:20301537)
+    url: https://hpo.jax.org/data/annotations
+  type: annotation
+  user: https://hpo.jax.org/
 activity_status: active
 ---

ontology/mp.md

@@ -13,7 +13,7 @@ browsers:
   label: Monarch
   url: http://monarchinitiative.org/phenotype/MP:0000001
 contact:
-  email: [email protected]
+  email: [email protected]
   github: sbello
   label: Sue Bello
   orcid: 0000-0003-4606-0597

ontology/stato.md

@@ -3,10 +3,10 @@ layout: ontology_detail
 id: stato
 title: The Statistical Methods Ontology
 contact:
-  email: alejandra.gonzalez.beltran@gmail.com
-  github: agbeltran
-  label: Alejandra Gonzalez-Beltran
-  orcid: 0000-0003-3499-8262
+  email: proccaserra@gmail.com
+  github: proccaserra
+  label: Philippe Rocca-Serra
+  orcid: 0000-0001-9853-5668
 depicted_by: https://raw.githubusercontent.com/ISA-tools/stato/dev/images/stato-logo-3.png
 description: STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.
 domain: information technology

registry/ontologies.jsonld

@@ -4785,7 +4785,20 @@
                 "medical"
             ],
             "title": "Medical Action Ontology",
-            "tracker": "https://github.com/monarch-initiative/MAxO/issues"
+            "tracker": "https://github.com/monarch-initiative/MAxO/issues",
+            "usages": [
+                {
+                    "description": "MAxO is used to capture disease-treatment relations from the scientific literature.",
+                    "examples": [
+                        {
+                            "description": "Bardet-biedl Syndrome 1 (MONDO:0008854) is treated through dietary interventions (MAXO:0000088) according to Forsyth et al 2003 (PMID:20301537)",
+                            "url": "https://hpo.jax.org/data/annotations"
+                        }
+                    ],
+                    "type": "annotation",
+                    "user": "https://hpo.jax.org/"
+                }
+            ]
         },
         {
             "activity_status": "active",
@@ -5451,7 +5464,7 @@
                 }
             ],
             "contact": {
-                "email": "[email protected]",
+                "email": "[email protected]",
                 "github": "sbello",
                 "label": "Sue Bello",
                 "orcid": "0000-0003-4606-0597"
@@ -8742,10 +8755,10 @@
         {
             "activity_status": "active",
             "contact": {
-                "email": "alejandra.gonzalez.beltran@gmail.com",
-                "github": "agbeltran",
-                "label": "Alejandra Gonzalez-Beltran",
-                "orcid": "0000-0003-3499-8262"
+                "email": "proccaserra@gmail.com",
+                "github": "proccaserra",
+                "label": "Philippe Rocca-Serra",
+                "orcid": "0000-0001-9853-5668"
             },
             "depicted_by": "https://raw.githubusercontent.com/ISA-tools/stato/dev/images/stato-logo-3.png",
             "description": "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.",